View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6400_high_6 (Length: 298)
Name: NF6400_high_6
Description: NF6400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6400_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 26609166 - 26608899
Alignment:
| Q |
16 |
aatatctaaaactattatagatattcagaaccttagtttatggtcacgatagggaagctttgtttaaaatcatggttataataaaacaagtgtttgtcta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26609166 |
aatatctaaaactattatagatattcagaaccttagtttatggtcacgatagggaagctttgtttaaaatcatggttataataaaacaagtgtttgtcta |
26609067 |
T |
|
| Q |
116 |
aatattaagatcaggttatgaatgtagtcatattccctctttaggtnnnnnnnnnncttctaaatgtcaccaaattaagaggagataaaactggaaaatg |
215 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26609066 |
aatattaagatcagcttatgaatgtagtcatatttcctctttaggtaaaaaaaaaacttctaaatgtcaccaagttaagaggagataaaactggaaaatg |
26608967 |
T |
|
| Q |
216 |
agtttataaatgagagacattcgtgattctattagtcgatttggatttaatgagttagacatgtaatt |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
26608966 |
agtttataaatgagagacattcgtgattctattaatcgatttggtattaatgagttagacatgtaatt |
26608899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University