View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6400_high_9 (Length: 274)
Name: NF6400_high_9
Description: NF6400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6400_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 264
Target Start/End: Complemental strand, 16460054 - 16459802
Alignment:
| Q |
17 |
actaatcatagaatgataatgattttccattttaatgtaccagttattaaag-aaatcgattgttgttattatgtttatgaagtttgaattttccagatt |
115 |
Q |
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| T |
16460054 |
actaatcgtagaatgataatgattttccattttaatgtaccagtcattaaagtaaatcgattgttgttattatgtttatgaagtttgaattttccagatt |
16459955 |
T |
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| Q |
116 |
attattaatatcctacttcactttaatttgtcgatgtgttactcttctttggcatgatt----tatatggtgtttgctttatttggaacttttagtttgg |
211 |
Q |
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| T |
16459954 |
attattaatatcctacttcactttaatttgtcgatgtgttactcttctttggcatgatttacatatatggtgtttgctttatttggaacttttagtttgg |
16459855 |
T |
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| Q |
212 |
tgcaattaatcttccatctaggccaaaatagaaaattaacttaggcacctatg |
264 |
Q |
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| T |
16459854 |
tgcaattaatcttccatctaggccaaaatagaaaattaacttatgcacctatg |
16459802 |
T |
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