View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6400_low_10 (Length: 288)
Name: NF6400_low_10
Description: NF6400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6400_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 42820941 - 42821021
Alignment:
| Q |
69 |
aaaaaacagaacatagaattcagcttttacattataa----gcagtcatattctcaatatggtgacactttttactttcaa |
145 |
Q |
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| T |
42820941 |
aaaaaacagaacatataattcagcttttacattataattaagcagtcatattctcaatatggtgacactttttactttcaa |
42821021 |
T |
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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 42820841 - 42820903
Alignment:
| Q |
9 |
catcatcaaataaaagaggctcaatcctgtaggattacttcatgtacaattttttaaaataaa |
71 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42820841 |
catcgtcaaataaaagaggctctatcctgtaggattacttcatgtacaattttttaaaataaa |
42820903 |
T |
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