View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6400_low_13 (Length: 251)
Name: NF6400_low_13
Description: NF6400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6400_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 42634582 - 42634342
Alignment:
| Q |
1 |
tttaattctattagttttgctcatgttagacgcgtggctaactatgctgcacattacttagaaaaatttgctcttttatccaattcggaccttgtttgga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42634582 |
tttaattctattagttttgctcatgttagacgcgtggctaactatgctgcacattacttagcaaaatttgctcttttatccaattcggaccttgtttgga |
42634483 |
T |
|
| Q |
101 |
tcgaagaaactccatcctttttaatgaaattggtttcatttnnnnnnnnnnnnnnnttaacaatacaatagaaaactcaacttcttcgaaaaatatttgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
42634482 |
tcgaagaaactccatcctttttaatgaaattggtttcatttaaaaaaaataaaaaattaacaatacaatagaaaactcaacttcttcaaaaaatatatgt |
42634383 |
T |
|
| Q |
201 |
tttccattccattaactaccacattgccatttatctctgtg |
241 |
Q |
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|||||||||||||||||| ||||||||||||| ||| |||| |
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| T |
42634382 |
tttccattccattaactaacacattgccatttgtctttgtg |
42634342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 25518270 - 25518169
Alignment:
| Q |
1 |
tttaattctattagttttgctcatgttagacgcgtggctaactatgctgcacattacttagaaaaatttgctcttttatccaattcggaccttgtttgga |
100 |
Q |
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|||||||| ||||| |||||||||||||| || ||||||||| | ||||| |||||||||| |||||||||||||| ||||||||||||| ||||||||| |
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| T |
25518270 |
tttaattcaattagctttgctcatgttaggcgtgtggctaaccaagctgcgcattacttagcaaaatttgctctttcatccaattcggactttgtttgga |
25518171 |
T |
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| Q |
101 |
tc |
102 |
Q |
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|| |
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| T |
25518170 |
tc |
25518169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 37433166 - 37433273
Alignment:
| Q |
9 |
tattagttttgctcatgttagacgcgtggctaactatgctgcacattacttagaaaaatttgctcttttatccaattcggaccttgtttggatcgaagaa |
108 |
Q |
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| T |
37433166 |
tattagctttgctcgtgttaggcgtgtggctaaccaagttgtgcattacttagcaaaatttgctctttcttccaattcagactttgtatggatcgaagaa |
37433265 |
T |
|
| Q |
109 |
actccatc |
116 |
Q |
| |
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|| ||||| |
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| T |
37433266 |
accccatc |
37433273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 25518171 - 25518133
Alignment:
| Q |
78 |
atccaattcggaccttgtttggatcgaagaaactccatc |
116 |
Q |
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| T |
25518171 |
atccaattcggactttgtttggattgaagaaactccatc |
25518133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 31617071 - 31617120
Alignment:
| Q |
52 |
cattacttagaaaaatttgctcttttatccaattcggaccttgtttggat |
101 |
Q |
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|||||||||| ||||||| ||||| ||||||||||||||| |||||||| |
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| T |
31617071 |
cattacttagcaaaattttatctttcatccaattcggacctagtttggat |
31617120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 7184883 - 7184768
Alignment:
| Q |
1 |
tttaattctattagttttgctcatgttagacgcgtggctaactatgctgcacattacttagaaaaatttgctcttttatccaattcggaccttgtttgga |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||| || ||||||||| | | ||| |||||| ||| ||||||| |||||| | | |||| | || |||||||| |
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| T |
7184883 |
tttaactctattagttttgctcatgttaggcgtgtggctaaccaagttgcgcattacctagcaaaattttctctttcacctaatttgaactctgtttgga |
7184784 |
T |
|
| Q |
101 |
tcgaagaaactccatc |
116 |
Q |
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|||||||||||||||| |
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| T |
7184783 |
tcgaagaaactccatc |
7184768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 30941951 - 30941892
Alignment:
| Q |
1 |
tttaattctattagttttgctcatgttagacgcgtggctaactatgctgcacattactta |
60 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| || |||||| | ||||||||||||||| |
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|
| T |
30941951 |
tttaattctattagctttgctcatattagacgtgtagctaaccaagctgcacattactta |
30941892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 20589198 - 20589313
Alignment:
| Q |
1 |
tttaattctattagttttgctcatgttagacgcgtggctaactatgctgcacattacttagaaaaatttgctcttttatccaattcggaccttgtttgga |
100 |
Q |
| |
|
||||||| |||||| ||| |||||||||| | ||||||||| | |||| ||||| |||| || ||||||||||| ||||||||| || || |||||| |
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| T |
20589198 |
tttaattttattagctttactcatgttaggtgtgtggctaaccaagctgagcattatttagcaatatttgctctttcatccaattcaaactttttttgga |
20589297 |
T |
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| Q |
101 |
tcgaagaaactccatc |
116 |
Q |
| |
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|||||| ||||||||| |
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| T |
20589298 |
tcgaagtaactccatc |
20589313 |
T |
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