View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6400_low_15 (Length: 249)

Name: NF6400_low_15
Description: NF6400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6400_low_15
NF6400_low_15
[»] chr5 (1 HSPs)
chr5 (65-234)||(1206898-1207067)
[»] scaffold0092 (1 HSPs)
scaffold0092 (17-51)||(15380-15414)
[»] chr6 (4 HSPs)
chr6 (17-51)||(14185924-14185958)
chr6 (17-51)||(25492940-25492974)
chr6 (17-51)||(25505013-25505047)
chr6 (10-50)||(7244062-7244102)
[»] chr4 (1 HSPs)
chr4 (17-51)||(14437999-14438033)
[»] chr3 (4 HSPs)
chr3 (17-51)||(9553555-9553589)
chr3 (17-51)||(33573394-33573428)
chr3 (12-50)||(43099486-43099524)
chr3 (17-49)||(9523842-9523874)
[»] chr2 (2 HSPs)
chr2 (17-51)||(18971720-18971754)
chr2 (17-51)||(38083010-38083044)
[»] chr1 (4 HSPs)
chr1 (17-51)||(1957364-1957398)
chr1 (17-51)||(1963058-1963092)
chr1 (17-51)||(2415244-2415278)
chr1 (17-50)||(20610117-20610150)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 65 - 234
Target Start/End: Original strand, 1206898 - 1207067
Alignment:
Q  65 atgagacatgagatgttgtggtatttttatggagtaataattgccctagtatacggtccattttgactactaattgaggtcaaaaactgttcttggtttg 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||    
T  1206898 atgagacatgagatgttgtggtatttttatggagtaataattgccctagtatacggtccattttgtccactaattgaggtcaaaaacagttcttggtttg 1206997  T
Q  165 ttgatgcacacggcgtgtttgtatttgcgcctttacttcacaccatttccattcaacatgaggttgatgt 234  Q
    ||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  1206998 ttgatgcacactgcgtgtttgtatttgcgcctttacttcaaatcatttccattcaacatgaggttgatgt 1207067  T

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Target: scaffold0092 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 15380 - 15414
Alignment:
Q  17 aaataatatgtgagtcaaaagctaataaaatagcc 51  Q
    |||||||||||||||||||||||||| ||||||||    
T  15380 aaataatatgtgagtcaaaagctaatcaaatagcc 15414  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 14185924 - 14185958
Alignment:
Q  17 aaataatatgtgagtcaaaagctaataaaatagcc 51  Q
    |||||||||||||||||||||||||| ||||||||    
T  14185924 aaataatatgtgagtcaaaagctaatcaaatagcc 14185958  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 25492974 - 25492940
Alignment:
Q  17 aaataatatgtgagtcaaaagctaataaaatagcc 51  Q
    |||||||||||||||||||||||||| ||||||||    
T  25492974 aaataatatgtgagtcaaaagctaatcaaatagcc 25492940  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 25505047 - 25505013
Alignment:
Q  17 aaataatatgtgagtcaaaagctaataaaatagcc 51  Q
    |||||||||||||||||||||||||| ||||||||    
T  25505047 aaataatatgtgagtcaaaagctaatcaaatagcc 25505013  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 7244102 - 7244062
Alignment:
Q  10 aattgttaaataatatgtgagtcaaaagctaataaaatagc 50  Q
    |||||| |||||||  |||||||||||||||||||||||||    
T  7244102 aattgtgaaataattagtgagtcaaaagctaataaaatagc 7244062  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 14437999 - 14438033
Alignment:
Q  17 aaataatatgtgagtcaaaagctaataaaatagcc 51  Q
    |||||||||||||||||||||||||| ||||||||    
T  14437999 aaataatatgtgagtcaaaagctaatcaaatagcc 14438033  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 9553589 - 9553555
Alignment:
Q  17 aaataatatgtgagtcaaaagctaataaaatagcc 51  Q
    |||||||||||||||||||||||||| ||||||||    
T  9553589 aaataatatgtgagtcaaaagctaatcaaatagcc 9553555  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 33573394 - 33573428
Alignment:
Q  17 aaataatatgtgagtcaaaagctaataaaatagcc 51  Q
    |||||||||||||||||||||||||| ||||||||    
T  33573394 aaataatatgtgagtcaaaagctaatcaaatagcc 33573428  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 43099486 - 43099524
Alignment:
Q  12 ttgttaaataatatgtgagtcaaaagctaataaaatagc 50  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  43099486 ttgtgaaataatatgtgagtcaaaagctaatcaaatagc 43099524  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 9523874 - 9523842
Alignment:
Q  17 aaataatatgtgagtcaaaagctaataaaatag 49  Q
    |||||||||||||||||||||||||| ||||||    
T  9523874 aaataatatgtgagtcaaaagctaatcaaatag 9523842  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 18971754 - 18971720
Alignment:
Q  17 aaataatatgtgagtcaaaagctaataaaatagcc 51  Q
    |||||||||||||||||||||||||| ||||||||    
T  18971754 aaataatatgtgagtcaaaagctaatcaaatagcc 18971720  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 38083044 - 38083010
Alignment:
Q  17 aaataatatgtgagtcaaaagctaataaaatagcc 51  Q
    |||||||||||||||||||||||||| ||||||||    
T  38083044 aaataatatgtgagtcaaaagctaatcaaatagcc 38083010  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 1957364 - 1957398
Alignment:
Q  17 aaataatatgtgagtcaaaagctaataaaatagcc 51  Q
    |||||||||||||||||||||||||| ||||||||    
T  1957364 aaataatatgtgagtcaaaagctaatcaaatagcc 1957398  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 1963058 - 1963092
Alignment:
Q  17 aaataatatgtgagtcaaaagctaataaaatagcc 51  Q
    |||||||||||||||||||||||||| ||||||||    
T  1963058 aaataatatgtgagtcaaaagctaatcaaatagcc 1963092  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 2415278 - 2415244
Alignment:
Q  17 aaataatatgtgagtcaaaagctaataaaatagcc 51  Q
    |||||||||||||||||||||||||| ||||||||    
T  2415278 aaataatatgtgagtcaaaagctaatcaaatagcc 2415244  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 20610150 - 20610117
Alignment:
Q  17 aaataatatgtgagtcaaaagctaataaaatagc 50  Q
    |||||||||||||||||||||||||| |||||||    
T  20610150 aaataatatgtgagtcaaaagctaatcaaatagc 20610117  T

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