View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6400_low_17 (Length: 241)

Name: NF6400_low_17
Description: NF6400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6400_low_17
NF6400_low_17
[»] chr7 (2 HSPs)
chr7 (19-241)||(42730250-42730472)
chr7 (79-142)||(37345951-37346014)
[»] chr2 (13 HSPs)
chr2 (45-184)||(31385728-31385868)
chr2 (116-205)||(13154480-13154569)
chr2 (45-205)||(29873564-29873724)
chr2 (67-142)||(29874073-29874148)
chr2 (98-183)||(18204465-18204549)
chr2 (45-205)||(30313149-30313308)
chr2 (99-183)||(2336616-2336700)
chr2 (67-205)||(30323435-30323572)
chr2 (157-207)||(45635977-45636027)
chr2 (158-203)||(25390036-25390080)
chr2 (67-206)||(15880232-15880371)
chr2 (67-183)||(33561501-33561616)
chr2 (67-167)||(33953821-33953921)
[»] chr6 (4 HSPs)
chr6 (67-205)||(6071103-6071240)
chr6 (67-205)||(8481898-8482034)
chr6 (98-141)||(27226675-27226718)
chr6 (40-205)||(10074385-10074548)
[»] chr5 (3 HSPs)
chr5 (80-205)||(31509594-31509718)
chr5 (66-205)||(36521945-36522081)
chr5 (80-153)||(31509753-31509826)
[»] chr4 (8 HSPs)
chr4 (128-184)||(10370114-10370170)
chr4 (98-183)||(41603270-41603355)
chr4 (40-133)||(1731667-1731761)
chr4 (88-142)||(34544139-34544193)
chr4 (67-152)||(23556914-23556999)
chr4 (157-207)||(53467109-53467159)
chr4 (45-84)||(12197458-12197498)
chr4 (67-131)||(22183312-22183376)
[»] chr1 (4 HSPs)
chr1 (67-183)||(1188638-1188753)
chr1 (116-205)||(50081156-50081244)
chr1 (161-202)||(47380262-47380302)
chr1 (67-183)||(19283505-19283620)
[»] chr8 (4 HSPs)
chr8 (97-184)||(40991744-40991831)
chr8 (117-188)||(40417652-40417723)
chr8 (88-205)||(4154352-4154467)
chr8 (98-183)||(4154747-4154831)
[»] chr3 (2 HSPs)
chr3 (98-141)||(260805-260848)
chr3 (45-142)||(25317191-25317289)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 42730472 - 42730250
Alignment:
Q  19 aaggaccacccacatttggcaagaaaaaccacacatgtgagagaaacacacacttttatccaaaacttcaaggcaattggtttatgggtcttttcattta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42730472 aaggaccacccacatttggcaagaaaaaccacacatgtgagagaaacacacacttttatccaaaacttcaaggcaattggtttatgggtcttttcattta 42730373  T
Q  119 taaaatgatcaacctccacttttcaaaccgatgtggagcttctaactcagacttgctacacaacaatcttcccctcaagtgtgagtcattctcaagcgga 218  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  42730372 taaaatgatcaacctccacttttcaaaccgatgtggaacttctaactcagacttgctacacaacaatcttcccctcaagtgtgagtcattctcaagcaga 42730273  T
Q  219 agcttttccatctgcacacctgc 241  Q
    |||||||||||||||||||||||    
T  42730272 agcttttccatctgcacacctgc 42730250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 142
Target Start/End: Complemental strand, 37346014 - 37345951
Alignment:
Q  79 caaaacttcaaggcaattggtttatgggtcttttcatttataaaatgatcaacctccacttttc 142  Q
    |||||||| ||||||||  ||||||||||||| ||| |||||||||| | ||||||||||||||    
T  37346014 caaaactttaaggcaatatgtttatgggtcttctcacttataaaatgtttaacctccacttttc 37345951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 184
Target Start/End: Complemental strand, 31385868 - 31385728
Alignment:
Q  45 aaccacacatgtgagagaaacac-acacttttatccaaaacttcaaggcaattggtttatgggtcttttcatttataaaatgatcaacctccacttttca 143  Q
    ||||||||| |||| ||| |||| |||||| |  ||||||| | |||||||| |||||||||||| ||||| ||||||  || |||||||||| |||||     
T  31385868 aaccacacaagtgaaagagacaccacacttattcccaaaaccttaaggcaatgggtttatgggtcctttcacttataaggtgctcaacctccatttttct 31385769  T
Q  144 aaccgatgtggagcttctaactcagacttgctacacaacaa 184  Q
    |||||||||    ||||||||||| ||||||||||||||||    
T  31385768 aaccgatgtcagacttctaactcacacttgctacacaacaa 31385728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 205
Target Start/End: Original strand, 13154480 - 13154569
Alignment:
Q  116 ttataaaatgatcaacctccacttttcaaaccgatgtggagcttctaactcagacttgctacacaacaatcttcccctcaagtgtgagtc 205  Q
    ||||||| || |||||||||||||||| || | |||||   ||||||||||| |||||||||||||||||||||| ||||| || |||||    
T  13154480 ttataaagtgttcaacctccacttttctaagcaatgtgagacttctaactcatacttgctacacaacaatcttcctctcaattgcgagtc 13154569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 205
Target Start/End: Original strand, 29873564 - 29873724
Alignment:
Q  45 aaccacacatgtgagagaaaca-cacacttttatccaaaacttcaaggcaattggtttatgggtcttttcatttataaaatgatcaacctccacttttca 143  Q
    ||||||||| |||||||| ||  |||||| |||  |||||| | ||||||||  ||||||| ||| |  || |||||||||| ||||||||||||||||     
T  29873564 aaccacacaagtgagagagacgtcacactcttactcaaaaccttaaggcaatgagtttatgagtcctcccacttataaaatgttcaacctccacttttct 29873663  T
Q  144 aaccgatgtggagcttctaactcagacttgctacacaacaatcttcccctcaagtgtgagtc 205  Q
    | | |||||||  | | |||| ||  ||||| |||||||||||| |||||||||||||||||    
T  29873664 atctgatgtgggacatgtaacacacccttgc-acacaacaatctccccctcaagtgtgagtc 29873724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 29874073 - 29874148
Alignment:
Q  67 cacacttttatccaaaacttcaaggcaattggtttatgggtcttttcatttataaaatgatcaacctccacttttc 142  Q
    |||||| ||||||||||| | |||||||| |||||||||||| |  || ||||||| || ||||||||||||||||    
T  29874073 cacactcttatccaaaaccttaaggcaatgggtttatgggtcctcccaattataaagtgttcaacctccacttttc 29874148  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 18204465 - 18204549
Alignment:
Q  98 gtttatgggtcttttcatttataaaatgatcaacctccacttttcaaaccgatgtggagcttctaactcagacttgctacacaaca 183  Q
    ||||||||||| |||||||||| ||||| |||| |||| |||||| ||||||  |||  ||||||||||| |||||| ||||||||    
T  18204465 gtttatgggtcctttcatttattaaatgctcaatctccgcttttctaaccgacttgggacttctaactcacacttgc-acacaaca 18204549  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 205
Target Start/End: Complemental strand, 30313308 - 30313149
Alignment:
Q  45 aaccacacatgtgagagaaacac-acacttttatccaaaacttcaaggcaattggtttatgggtcttttcatttataaaatgatcaacctccacttttca 143  Q
    ||||||||| |||||||| || | ||||| ||| ||||||  | ||||||||  |||| |||||| | ||| ||||||  || ||||||||||||||||     
T  30313308 aaccacacaagtgagagagacgccacactcttacccaaaatcttaaggcaatgagtttttgggtcctctcacttataag-tgttcaacctccacttttct 30313210  T
Q  144 aaccgatgtggagcttctaactcagacttgctacacaacaatcttcccctcaagtgtgagtc 205  Q
    | ||||||||   | | |||| ||  ||||| ||||||||||||||||||||||||||||||    
T  30313209 atccgatgtgagacatataacacacgcttgc-acacaacaatcttcccctcaagtgtgagtc 30313149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 2336700 - 2336616
Alignment:
Q  99 tttatgggtcttttcatttataaaatgatcaacctccacttttcaaaccgatgtggagcttctaactcagacttgctacacaaca 183  Q
    |||||||||| | ||| ||||||| || |||||||||||||||| || | || || | ||||||||||| || ||||||||||||    
T  2336700 tttatgggtcctctcacttataaagtgttcaacctccacttttctaagcaatttgaaacttctaactcacacatgctacacaaca 2336616  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 205
Target Start/End: Complemental strand, 30323572 - 30323435
Alignment:
Q  67 cacacttttatccaaaacttcaaggcaattggtttatgggtcttttcatttataaaatgatcaacctccacttttcaaaccgatgtggagcttctaactc 166  Q
    |||||| ||| ||||||| | ||||||||  |||||| |||| | ||| || |||| || |||||||||| ||||| | | ||| |||  | | |||| |    
T  30323572 cacactcttacccaaaaccttaaggcaatgagtttataggtcctctcacttctaaagtgttcaacctccaattttctatctgatttgggacatataacac 30323473  T
Q  167 agacttgctacacaacaatcttcccctcaagtgtgagtc 205  Q
    | |||||| |||||||||||| |||||||||||||||||    
T  30323472 acacttgc-acacaacaatctccccctcaagtgtgagtc 30323435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 45635977 - 45636027
Alignment:
Q  157 cttctaactcagacttgctacacaacaatcttcccctcaagtgtgagtcat 207  Q
    |||||| |||| ||||| ||||||||||||| || ||||||||||||||||    
T  45635977 cttctatctcacacttggtacacaacaatctccctctcaagtgtgagtcat 45636027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 25390036 - 25390080
Alignment:
Q  158 ttctaactcagacttgctacacaacaatcttcccctcaagtgtgag 203  Q
    |||||||||| |||||||||||||||||| |||||| |||||||||    
T  25390036 ttctaactcaaacttgctacacaacaatc-tcccctgaagtgtgag 25390080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 206
Target Start/End: Complemental strand, 15880371 - 15880232
Alignment:
Q  67 cacacttttatccaaaacttcaaggcaattggtttatgggtcttttcatttataaaatgatcaacctccacttttcaaaccgatgtggagcttctaactc 166  Q
    |||||| ||| ||||||| | |||||||| |||||||||||| | | | ||||||  || |||||||  ||| ||  | |||||||||| | | ||||||    
T  15880371 cacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactcttttatccgatgtggaacatataactc 15880272  T
Q  167 agacttgctacacaacaa-tcttcccctcaagtgtgagtca 206  Q
    | ||||| ||||||||||  |||||||| ||||||||||||    
T  15880271 acacttg-tacacaacaacacttccccttaagtgtgagtca 15880232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 183
Target Start/End: Original strand, 33561501 - 33561616
Alignment:
Q  67 cacacttttatccaaaacttcaaggcaattggtttatgggtcttttcatttataaaatgatcaacctccacttttcaaaccgatgtggagcttctaactc 166  Q
    |||||| ||| ||||||| | ||| ||||  ||||||||||| | ||| ||||||| || | |||||||||||||| | | |||||||| | | ||||||    
T  33561501 cacactcttacccaaaaccttaagacaatgagtttatgggtcctctcacttataaagtgtttaacctccacttttctatctgatgtggaacatataactc 33561600  T
Q  167 agacttgctacacaaca 183  Q
    | |||||| ||||||||    
T  33561601 acacttgc-acacaaca 33561616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 167
Target Start/End: Original strand, 33953821 - 33953921
Alignment:
Q  67 cacacttttatccaaaacttcaaggcaattggtttatgggtcttttcatttataaaatgatcaacctccacttttcaaaccgatgtggagcttctaactc 166  Q
    |||||| ||| |||||| || |||||||  |||||||||||| | ||| ||||| | || |||||||||||||||| | | |||||||  ||| ||||||    
T  33953821 cacactcttacccaaaattttaaggcaacaggtttatgggtcctctcacttatatagtgttcaacctccacttttctatctgatgtgggacttataactc 33953920  T
Q  167 a 167  Q
    |    
T  33953921 a 33953921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 205
Target Start/End: Complemental strand, 6071240 - 6071103
Alignment:
Q  67 cacacttttatccaaaacttcaaggcaattggtttatgggtcttttcatttataaaatgatcaacctccacttttcaaaccgatgtggagcttctaactc 166  Q
    |||||| ||||||||||  | ||||||||  |||||||| || | ||| ||||||| || |||||||||||||||| |  | ||||||  | | ||||||    
T  6071240 cacactcttatccaaaatcttaaggcaatgagtttatggatcatctcacttataaagtgttcaacctccacttttctattcaatgtgggacatataactc 6071141  T
Q  167 agacttgctacacaacaatcttcccctcaagtgtgagtc 205  Q
    | |||||| ||||||||||||||||||||| ||||||||    
T  6071140 acacttgc-acacaacaatcttcccctcaaatgtgagtc 6071103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 205
Target Start/End: Complemental strand, 8482034 - 8481898
Alignment:
Q  67 cacacttttatccaaaacttcaaggcaattggtttatgggtcttttcatttataaaatgatcaacctccacttttcaaaccgatgtggagcttctaactc 166  Q
    |||||| ||| ||||||  | ||||||||  ||||||| ||| | ||||||||||| || |||||||||||||||  | | |||||||| | | ||||||    
T  8482034 cacactcttacccaaaatcttaaggcaatgagtttatgagtcatctcatttataaagtgttcaacctccacttttatatctgatgtgga-catataactc 8481936  T
Q  167 agacttgctacacaacaatcttcccctcaagtgtgagtc 205  Q
    | |||||| |||||||||||| |||||||||||||||||    
T  8481935 acacttgc-acacaacaatctccccctcaagtgtgagtc 8481898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 27226675 - 27226718
Alignment:
Q  98 gtttatgggtcttttcatttataaaatgatcaacctccactttt 141  Q
    ||||||||||| | ||||||||||||||||||||||||||||||    
T  27226675 gtttatgggtcatctcatttataaaatgatcaacctccactttt 27226718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 205
Target Start/End: Original strand, 10074385 - 10074548
Alignment:
Q  40 agaaaaaccacacatgtgagagaaacac-acacttttatccaaaacttcaaggcaattggtttatgggtcttttcatttataaaatgatcaacctccact 138  Q
    |||| ||||||||  |||||||| |||| ||||| ||| ||||||| | ||||||||  ||||||||||| | | | ||||||  || |||||||  |||    
T  10074385 agaacaaccacactagtgagagagacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcctcttacttataaggtgttcaacctttact 10074484  T
Q  139 tttcaaaccgatgtggagcttctaactcagacttgctacacaacaatcttcccctcaagtgtgagtc 205  Q
    |||| | |||||||||  | ||||||||| |||||| ||||||||  || ||||| |||||||||||    
T  10074485 tttctatccgatgtgggacctctaactcacacttgc-acacaaca--ctcccccttaagtgtgagtc 10074548  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 31509718 - 31509594
Alignment:
Q  80 aaaacttcaaggcaattggtttatgggtcttttcatttataaaatgatcaacctccacttttcaaaccgatgtggagcttctaactcagacttgctacac 179  Q
    ||||| ||||||||||  ||||||| ||| | ||| ||||||| || |||||||||||||||| | ||||||||   | | ||||||| |||||| ||||    
T  31509718 aaaacctcaaggcaatgagtttatgagtcctctcacttataaagtgctcaacctccacttttctatccgatgtgagacatataactcacacttgc-acac 31509620  T
Q  180 aacaatcttcccctcaagtgtgagtc 205  Q
    ||||||||  ||||||||||||||||    
T  31509619 aacaatctctccctcaagtgtgagtc 31509594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 205
Target Start/End: Original strand, 36521945 - 36522081
Alignment:
Q  66 acacacttttatccaaaacttcaaggcaattggtttatgggtcttttcatttataaaatgatcaacctccacttttcaaaccgatgtggagcttctaact 165  Q
    ||||||| ||| ||||||| | ||||||||||||||||||||| | ||||||| | | || |||||||| ||||||| | | |||||||  | | |||||    
T  36521945 acacactcttacccaaaaccttaaggcaattggtttatgggtcctctcatttaaagagtgttcaacctcaacttttctatctgatgtgggacatataact 36522044  T
Q  166 cagacttgctacacaacaatcttcccctcaagtgtgagtc 205  Q
    || ||||||  ||||||| |||  ||||||||||||||||    
T  36522045 cacacttgc-gcacaacactct--ccctcaagtgtgagtc 36522081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 153
Target Start/End: Complemental strand, 31509826 - 31509753
Alignment:
Q  80 aaaacttcaaggcaattggtttatgggtcttttcatttataaaatgatcaacctccacttttcaaaccgatgtg 153  Q
    ||||| ||||||||||  ||||||| ||| | ||| ||||||| || |||||||||||||||| | ||||||||    
T  31509826 aaaacctcaaggcaatgagtttatgagtcctctcacttataaagtgctcaacctccacttttctatccgatgtg 31509753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 10370114 - 10370170
Alignment:
Q  128 caacctccacttttcaaaccgatgtggagcttctaactcagacttgctacacaacaa 184  Q
    |||||||||| |||| |||||||||||| ||||||||||| ||||||||||||||||    
T  10370114 caacctccacgtttctaaccgatgtggaacttctaactcacacttgctacacaacaa 10370170  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 41603270 - 41603355
Alignment:
Q  98 gtttatgggtcttttcatttataaaatgatcaacctccacttttcaaaccgatgtggagcttctaactcagacttgctacacaaca 183  Q
    ||||||||||||| ||| ||||||| || |||||||||||||||| || | | ||||  ||||||||||| | |||||||||||||    
T  41603270 gtttatgggtcttctcacttataaagtgctcaacctccacttttccaagcaacgtgggacttctaactcacatttgctacacaaca 41603355  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 133
Target Start/End: Original strand, 1731667 - 1731761
Alignment:
Q  40 agaaaaaccacacatgtgagagaaacac-acacttttatccaaaacttcaaggcaattggtttatgggtcttttcatttataaaatgatcaacct 133  Q
    |||| ||||||||| |  |||||||||| ||||| ||| ||||||| | ||||||||||||||||||||| | | |||||||| ||| |||||||    
T  1731667 agaacaaccacacaagcaagagaaacaccacactcttacccaaaaccttaaggcaattggtttatgggtcctcttatttataagatgttcaacct 1731761  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 34544193 - 34544139
Alignment:
Q  88 aaggcaattggtttatgggtcttttcatttataaaatgatcaacctccacttttc 142  Q
    ||||||||  ||||||||||| | ||||||||||| |||||||||||||||||||    
T  34544193 aaggcaatgagtttatgggtcctctcatttataaagtgatcaacctccacttttc 34544139  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 23556914 - 23556999
Alignment:
Q  67 cacacttttatccaaaacttcaaggcaattggtttatgggtcttttcatttataaaatgatcaacctccacttttcaaaccgatgt 152  Q
    |||||| ||||||||||||| ||||||||   ||||||| |  | | |||||||||||| |||||||||||||||| | |||||||    
T  23556914 cacactcttatccaaaactttaaggcaatgattttatggattctcttatttataaaatgttcaacctccacttttctatccgatgt 23556999  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 53467159 - 53467109
Alignment:
Q  157 cttctaactcagacttgctacacaacaatcttcccctcaagtgtgagtcat 207  Q
    |||||| |||| ||||||||||||||||||| || |||||||||| |||||    
T  53467159 cttctacctcacacttgctacacaacaatctccctctcaagtgtgggtcat 53467109  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 12197498 - 12197458
Alignment:
Q  45 aaccacacatgtgagagaaaca-cacacttttatccaaaac 84  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  12197498 aaccacacaagtgagagaaacaccacacttttatccaaaac 12197458  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 22183312 - 22183376
Alignment:
Q  67 cacacttttatccaaaacttcaaggcaattggtttatgggtcttttcatttataaaatgatcaac 131  Q
    |||||| ||||||||||| | |||||||| |||||||||||| ||| | ||||||| || |||||    
T  22183312 cacactcttatccaaaaccttaaggcaatgggtttatgggtccttttacttataaattgttcaac 22183376  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 183
Target Start/End: Original strand, 1188638 - 1188753
Alignment:
Q  67 cacacttttatccaaaacttcaaggcaattggtttatgggtcttttcatttataaaatgatcaacctccacttttcaaaccgatgtggagcttctaactc 166  Q
    |||||||||| ||||||| | || |||||  ||||||| ||||| ||| |||||||||  |||||||||||||||| | ||||| |||| | | ||||||    
T  1188638 cacacttttacccaaaaccttaaagcaatgagtttatgagtcttctcacttataaaatattcaacctccacttttctatccgatatggaacatataactc 1188737  T
Q  167 agacttgctacacaaca 183  Q
    | |||||| ||||||||    
T  1188738 acacttgc-acacaaca 1188753  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 205
Target Start/End: Original strand, 50081156 - 50081244
Alignment:
Q  116 ttataaaatgatcaacctccacttttcaaaccgatgtggagcttctaactcagacttgctacacaacaatcttcccctcaagtgtgagtc 205  Q
    |||||||||| ||| |||||||||||  || | ||||||| ||||||||||| | ||| ||||||||| ||||  |||||||||||||||    
T  50081156 ttataaaatgttcagcctccactttttcaagcaatgtggaacttctaactcatatttgttacacaacagtctt-gcctcaagtgtgagtc 50081244  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 47380262 - 47380302
Alignment:
Q  161 taactcagacttgctacacaacaatcttcccctcaagtgtga 202  Q
    ||||||| |||||| |||||||||||||||||||||||||||    
T  47380262 taactcacacttgc-acacaacaatcttcccctcaagtgtga 47380302  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 183
Target Start/End: Original strand, 19283505 - 19283620
Alignment:
Q  67 cacacttttatccaaaacttcaaggcaattggtttatgggtcttttcatttataaaatgatcaacctccacttttcaaaccgatgtggagcttctaactc 166  Q
    |||||| ||||||||||| | ||||| ||  ||||||| ||| | ||||||| ||| || |||||||||||||||| | ||| |||||  | | ||||||    
T  19283505 cacactcttatccaaaaccttaaggcgatgagtttatgtgtcctctcatttacaaagtgctcaacctccacttttctatccggtgtgggacatataactc 19283604  T
Q  167 agacttgctacacaaca 183  Q
    | |||||| ||||||||    
T  19283605 acacttgc-acacaaca 19283620  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 40991831 - 40991744
Alignment:
Q  97 ggtttatgggtcttttcatttataaaatgatcaacctccacttttcaaaccgatgtggagcttctaactcagacttgctacacaacaa 184  Q
    |||||||||||| | ||| |||| || || |||||||||||||||| || | ||||||  ||||||||||| |||| |||||||||||    
T  40991831 ggtttatgggtcctctcacttatgaagtgttcaacctccacttttctaagcaatgtgggacttctaactcacacttcctacacaacaa 40991744  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 40417652 - 40417723
Alignment:
Q  117 tataaaatgatcaacctccacttttcaaaccgatgtggagcttctaactcagacttgctacacaacaatctt 188  Q
    ||||||||  |||||||| ||||||| ||  |||||||| ||||||| |||  |||||||||||||||||||    
T  40417652 tataaaatattcaacctcaacttttctaattgatgtggaacttctaattcactcttgctacacaacaatctt 40417723  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 205
Target Start/End: Original strand, 4154352 - 4154467
Alignment:
Q  88 aaggcaattggtttatgggtcttttcatttataaaatgatcaacctccacttttcaaaccgatgtggagcttctaactcagacttgctacacaacaatct 187  Q
    ||||||||  |||||||||||| | || ||||||| || |||||||||||||||| | | ||||| |  | | ||||||| | |||| |||||||||| |    
T  4154352 aaggcaatgagtttatgggtctct-cacttataaagtgttcaacctccacttttctatctgatgtaggacatataactcacatttgc-acacaacaattt 4154449  T
Q  188 tcccctcaagtgtgagtc 205  Q
     |||||||||||||||||    
T  4154450 ccccctcaagtgtgagtc 4154467  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 4154747 - 4154831
Alignment:
Q  98 gtttatgggtcttttcatttataaaatgatcaacctccacttttcaaaccgatgtggagcttctaactcagacttgctacacaaca 183  Q
    ||||||||||| ||||| ||||||| || |||||||||||||||| | | |||||||  | | ||||||| |||||| ||||||||    
T  4154747 gtttatgggtcctttcacttataaagtgttcaacctccacttttctatcagatgtgggacatataactcacacttgc-acacaaca 4154831  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 260805 - 260848
Alignment:
Q  98 gtttatgggtcttttcatttataaaatgatcaacctccactttt 141  Q
    ||||||||||| | ||||||||||||||||||||||||||||||    
T  260805 gtttatgggtcatctcatttataaaatgatcaacctccactttt 260848  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 25317289 - 25317191
Alignment:
Q  45 aaccacacatgtgagagaaacac-acacttttatccaaaacttcaaggcaattggtttatgggtcttttcatttataaaatgatcaacctccacttttc 142  Q
    ||||||||| |||||||| |||| ||||||||| ||||||| | |||||||   ||||||||||| | ||| ||| ||| || ||||||||||||||||    
T  25317289 aaccacacaagtgagagacacactacacttttacccaaaaccttaaggcaacaagtttatgggtcctctcagttacaaagtgctcaacctccacttttc 25317191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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