View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6400_low_5 (Length: 467)
Name: NF6400_low_5
Description: NF6400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6400_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 13 - 454
Target Start/End: Original strand, 49383689 - 49384127
Alignment:
| Q |
13 |
atcatcacagggcattattatagcattctgaggagctataggaccatagtcaaatgctattatcagtttggaacaaataaattcatatactactactaaa |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49383689 |
atcaccacagggcattattatagcattctgaggagctataggaccatagtcaaatgctattatcagtttggaacaaataaattcatatact---actaaa |
49383785 |
T |
|
| Q |
113 |
gttattaaaaatatttgtctagtgggtccttcaaaatgggacattttcatttttgtactctaatgtggggttgtttccgtgacacaagacaggaaaacct |
212 |
Q |
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| T |
49383786 |
gttattaaaaatatttgtctagtgggtccttcaaaatgggacattttcatttttgtactctaatgtggggttgtttccgtgacacaagacaggaaaacct |
49383885 |
T |
|
| Q |
213 |
catacaagtatccaaaattcttagttaattttgcgtgcagttagagataattttaactgctccctttgaaaattatgaagcaaacaagagcttaggatgt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49383886 |
catacaagtatccaaaattcttagttaattttgcgtgcagttagagataattttaactgctccctttgaaaattatgaagcaaacaagagcttaggatgt |
49383985 |
T |
|
| Q |
313 |
aattgattgattatttttgcataaaacgcggattcacatgctcataatacatagtgaatgtgatgctaaaattagtacctccaaattcaaatgtttttga |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49383986 |
aattgattgattatttttgcataaaacgcggattcacatgctcataatacatagtgaatgtgatgctaaaattagtacctccaaattcaaatgtttttga |
49384085 |
T |
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| Q |
413 |
gactctctaggagtatgtagacaaaactatgcacttgttttt |
454 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
49384086 |
gactctctaggagtatgtagacaaaactatgcacttgttttt |
49384127 |
T |
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