View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6400_low_6 (Length: 443)

Name: NF6400_low_6
Description: NF6400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6400_low_6
NF6400_low_6
[»] chr2 (3 HSPs)
chr2 (348-434)||(18677467-18677553)
chr2 (81-163)||(18674954-18675036)
chr2 (16-63)||(18674921-18674970)


Alignment Details
Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 348 - 434
Target Start/End: Original strand, 18677467 - 18677553
Alignment:
Q  348 gcacgccggtgcttatttattttattgtgttaccttgccagcttcatgagaattattagaacgtgttaaatacaaacacattcatct 434  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18677467 gcacgccggtgcttatttattttattgtgttaccttgccagcttcatgagaattattagaacgtgttaaatacaaacacattcatct 18677553  T

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Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 18674954 - 18675036
Alignment:
Q  81 agataaatatcatatatgatatccatcatggagtagcataaagtcatatatacttcaatccttaaccattttgttcaaaattt 163  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18674954 agataaatatcatatatgatatccatcaaggagtagcataaagtcatatatacttcaatccttaaccattttgttcaaaattt 18675036  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 18674921 - 18674970
Alignment:
Q  16 aaaaaatgcgagtttt--tatttttctatcaccagataaatatcatatat 63  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  18674921 aaaaaatgcgagtttttttatttttctatcaccagataaatatcatatat 18674970  T

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