View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6401_high_1 (Length: 414)
Name: NF6401_high_1
Description: NF6401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6401_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 14910659 - 14910258
Alignment:
| Q |
1 |
tgaaccttgagaggagcgaacccaagatctcaaaccaataccaatgtgaatcgaacttaaaatttctactaatattaatataacatatacacattataat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14910659 |
tgaaccttgagaggagcgaacccaagatctcaaaccaataccaatgtgaatcgaacttaaaatttctactaatattaatataacatatacacagtataat |
14910560 |
T |
|
| Q |
101 |
aaaagggtcgacgtagaaattacaaatgcattagttaaaaaaggaagactcccaatgtgagtggataaagccttatgccgcatagagaataagattatga |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14910559 |
aaaagggtcgacgtagaaatcacaaatgctttaactaaaaaaggaagactccgaatatgagtggataaagccttatgccgcatagagaataagattatga |
14910460 |
T |
|
| Q |
201 |
gttgaaaatcaca--------aatcactcagccaatgttcaaatgtgagcggtatagagcttttgcaccgtaaagaacaagagtatcaaatggaaaccac |
292 |
Q |
| |
|
||||||||||||| ||||||| || ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14910459 |
gttgaaaatcacaaatgcattaatcactaaggcaatgttcaaatgtgagcggtatagagattttgcatcgtaaagaacaagagtatcaaatggaaaccac |
14910360 |
T |
|
| Q |
293 |
aaatgtgttaattgtaaaaggtagtttttcgttgcgagtggcataaatcattatgctttaattgcaaaaacagtttctcaatgtcttgaaggtaatacaa |
392 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||| |
|
|
| T |
14910359 |
agatgtgttaattgtaaaaggtagttttccgttgcgagtggcataaatcattatgctttaattgcaaaaacagtttcccaatg---tgaatgtaatacaa |
14910263 |
T |
|
| Q |
393 |
ccttg |
397 |
Q |
| |
|
||||| |
|
|
| T |
14910262 |
ccttg |
14910258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University