View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6401_low_3 (Length: 224)
Name: NF6401_low_3
Description: NF6401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6401_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 27210439 - 27210625
Alignment:
| Q |
18 |
gaagtaagcgaataacttaactcagtatgatatagtagctaggttcgtttagttattatctgtttgtttgccacagatcatgtggttcatttaccaatct |
117 |
Q |
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| T |
27210439 |
gaagtaagcgaataacttaactcagtatgatatagtag----gttcgtttagttattatctgtttgtttgccacagatcatgtggttcatttaccaatct |
27210534 |
T |
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| Q |
118 |
gacttttcctttcatgtgcacaacagatacctatctctgagattgagggaaagacagttggtttgcatttctttacgacttcatacaaacc |
208 |
Q |
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| T |
27210535 |
gacttttcctttcatgtgcacaacagatacctatctctgagattgagggaaagacagttggtttgcatttctttacgacttcatacaaacc |
27210625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 27195275 - 27195379
Alignment:
| Q |
100 |
tggttcatttaccaatctgacttttcctttcatgtgcacaacagatacctatctctgagattgagggaaagacagttggtttgcatttctttacgacttc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||| |
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| T |
27195275 |
tggttcatttaccaatctgacttttcctttcatgtgcacaacagatacctatctctgagcttgagggaaagacagttggtttgcatttctgtgcgacttc |
27195374 |
T |
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| Q |
200 |
ataca |
204 |
Q |
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||||| |
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| T |
27195375 |
ataca |
27195379 |
T |
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