View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6402_low_2 (Length: 429)
Name: NF6402_low_2
Description: NF6402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6402_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 38628594 - 38628193
Alignment:
| Q |
18 |
catacttcaaagatgttgatgatgccaatgttgttgaaactgagagaataactataaccaaggtagctatagagagtattgaatgcattctaaccatttt |
117 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38628594 |
catacttcaaagatgtcgatgatgccaatgttgttgaaactgagagaataactataaccaaggtagctatagagagtattgaatgcattctaaccatttt |
38628495 |
T |
|
| Q |
118 |
taatttgtaggatatgctctatttttcagtattagtctgtttagtagtgtgagcagaaaaggaagcgaatggtatgcaagtatgtatatatgctgttgga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38628494 |
taatttgtaggatatgctctatttttcagtattagtctgtttagtagtgtgaacagaaaaggaagcgaatggtatgcaagtatgtatatatgctgttgga |
38628395 |
T |
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| Q |
218 |
tactaattaaggttgaggtgaagaatatatgcctcatcatgagtatatatataggttggaaaatatatgaaggggaggaggtgagagtaggtcttacttt |
317 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38628394 |
tactaattaaggttgaggtgaagaatatatgcc---tcatgagtatatatataggttggaaaatatatgaaggggaggaggtgagagtaggtcttacttt |
38628298 |
T |
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| Q |
318 |
ggaaa-gaaaacgtgtttggctgtagccttcaatgttaaataaaacttgaagtaatctacttttgaacacttcttcttgctcagtctggatgctatgcct |
416 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38628297 |
ggaaacaaaaacgtgtttggctgtagccttcaatgttaaacaaaacttgaagtaatctacttttgaacaattcttcttgctcagtctggatgctatgcct |
38628198 |
T |
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| Q |
417 |
atgct |
421 |
Q |
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||||| |
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| T |
38628197 |
atgct |
38628193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 38697687 - 38697808
Alignment:
| Q |
18 |
catacttcaaagatgttgatgatgccaatgttgttgaaactgagagaataactataaccaaggtagctatagagagtattgaatgcattctaaccatttt |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| | |
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| T |
38697687 |
catacttcaaagatgttgatgatgccaatgttgttgaaactgagagaataactataaccaaggtagctatagagagtattgcatgcattttaaccattgt |
38697786 |
T |
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| Q |
118 |
taatttgtaggatatgctctat |
139 |
Q |
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|| || ||| ||||||||||| |
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| T |
38697787 |
tagcttatagtatatgctctat |
38697808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 184 - 393
Target Start/End: Original strand, 38697894 - 38698112
Alignment:
| Q |
184 |
gaatggtatgcaagtatgtatatatgctgttggatactaattaaggttgaggtgaagaatatatgcctca---tcatgagt--atatatataggttggaa |
278 |
Q |
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||||||||||||||||| ||| || ||||||||| |||||||||||||||| ||| ||| |||||| |||| ||| ||||||||||||||| |
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| T |
38697894 |
gaatggtatgcaagtat--atagttgttgttggatatgaattaaggttgaggtggaga-tatctgcctctgcctcattagtgtatatatataggttgggg |
38697990 |
T |
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| Q |
279 |
aatatat------gaaggggaggaggtgagagtaggtcttactttggaaagaaaa-cgtgtttggctgtagccttcaatgttaaataaaacttgaagtaa |
371 |
Q |
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||||||| |||||||| ||| ||||||||||| |||||||| ||| |||| |||||||||||| |||||||||| ||| | | || |||||| || |
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| T |
38697991 |
aatatattatggtgaaggggaagagatgagagtaggtattactttgtaaacaaaaacgtgtttggctgcagccttcaattttagacagaagttgaagcaa |
38698090 |
T |
|
| Q |
372 |
tctacttttgaacacttcttct |
393 |
Q |
| |
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|| |||||||||| |||||||| |
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|
| T |
38698091 |
tccacttttgaactcttcttct |
38698112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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