View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6402_low_3 (Length: 240)
Name: NF6402_low_3
Description: NF6402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6402_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 43564915 - 43565135
Alignment:
| Q |
1 |
caaagaaaccacctttttgagaaaaagcaataactttttgaaggagtgaaggtggggcatttgaatcagagggtttgcaaatagaagagaatgaactgaa |
100 |
Q |
| |
|
|||||||||||||||| ||||||||| ||| |||||||||||||| ||||||||| |||||||| |||||||||||||| || |||||| |||| ||| |
|
|
| T |
43564915 |
caaagaaaccacctttgtgagaaaaatcaagaactttttgaaggattgaaggtggagcatttgattcagagggtttgcatatttcagagaaagaaccgaa |
43565014 |
T |
|
| Q |
101 |
agaaacattctcaggaacatcatggaacaaaggaacacctctcaccttaaactttccctcagataaatcaaataatgactcggttttgatgagatcaagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
43565015 |
agaaacattctcaggaacatcatggaacaaagaaacatctctaaccttaaactttccctcagataaatcaaataaagactcagttttgatgagatcaagg |
43565114 |
T |
|
| Q |
201 |
gttgtggaatttggtggagcc |
221 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
43565115 |
tttgtggaattcggtggagcc |
43565135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 36432870 - 36433075
Alignment:
| Q |
1 |
caaagaaaccacctttttgagaaaaagcaataactttttgaaggagtgaaggtggggcatttgaatcagagggtttgcaaatagaagagaatgaactgaa |
100 |
Q |
| |
|
|||||||||||||||| |||||||||| || ||| | || |||||||||||| |||||||| ||||||||||| || |||||||||||||||||||| |
|
|
| T |
36432870 |
caaagaaaccacctttgtgagaaaaagaaagaacacggtcaacgagtgaaggtggtgcatttgactcagagggtttacatatagaagagaatgaactgaa |
36432969 |
T |
|
| Q |
101 |
agaaacattctcaggaacatcatggaacaaaggaacacctctcaccttaaactttccctcagataaatcaaataatgactcggttttgatgagatcaagg |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| || || | || |||||||| |||||||||| |||||||| ||||||| | ||||||| |
|
|
| T |
36432970 |
agaaacattctcaggaacatcatgaaacaaaggaacacccctaacagtgaattttccctcggataaatcaagcaatgactcagttttgacaatatcaagg |
36433069 |
T |
|
| Q |
201 |
gttgtg |
206 |
Q |
| |
|
|||||| |
|
|
| T |
36433070 |
gttgtg |
36433075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 43973687 - 43973477
Alignment:
| Q |
1 |
caaagaaaccacctttttgagaaaaagcaataactttttgaaggagtgaaggtggggcatttgaatcagagggtttgcaaatagaagagaatgaactgaa |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| ||||| ||||||||||| |||||||| ||||||| |||||| |||| |||||| ||||| || |
|
|
| T |
43973687 |
caaagaaaccacctttgtgagaaaaagcatgaacacgttgaacaagtgaaggtggtgcatttgattcagaggttttgcatatagcagagaaagaactaaa |
43973588 |
T |
|
| Q |
101 |
agaaacattctcaggaacatcatggaacaaaggaacacctctcaccttaaactttccctcagataaatcaaataatgactcggttttgatgagatcaagg |
200 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| ||| |||| |||| ||||||| |||||||||||||| ||||| ||||||| ||||||||| |
|
|
| T |
43973587 |
agaaacattgttaggaacatcatggaacaaaggaacgcctttcacagtaaatgttccctcggataaatcaaataaagactcagttttgacaagatcaagg |
43973488 |
T |
|
| Q |
201 |
gttgtggaatt |
211 |
Q |
| |
|
| ||||||||| |
|
|
| T |
43973487 |
gctgtggaatt |
43973477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 8952246 - 8952102
Alignment:
| Q |
1 |
caaagaaaccacctttttgagaaaaagcaataactttttgaaggagtgaaggtggggcatttgaatcagagggtttgcaaatagaagagaatgaactgaa |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| | ||||| ||||||||||| |||||||| ||||||| |||||| |||| ||||| ||||| || |
|
|
| T |
8952246 |
caaagaaaccacctttgcgagaaaaagcatgaacatgttgaacaagtgaaggtggtgcatttgattcagaggttttgcatatagcagagacagaactaaa |
8952147 |
T |
|
| Q |
101 |
agaaacattctcaggaacatcatggaacaaaggaacacctctcac |
145 |
Q |
| |
|
|| |||| | | |||||||||||||||||||||||||||| |||| |
|
|
| T |
8952146 |
aggaacactgttaggaacatcatggaacaaaggaacacctttcac |
8952102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University