View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6403_high_19 (Length: 235)
Name: NF6403_high_19
Description: NF6403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6403_high_19 |
 | |
|
| [»] scaffold0032 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0121 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 228
Target Start/End: Complemental strand, 21966197 - 21965979
Alignment:
| Q |
10 |
ggtggattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21966197 |
ggtggattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacagcatca |
21966098 |
T |
|
| Q |
110 |
gtgttagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgttagctgttgaag |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21966097 |
gtgttagtgaatggttgcccgaccgatgagtttcattttgaaagaggtcttcgtcaaggggatcctctttccccttttctgtttctgttagctgctgaag |
21965998 |
T |
|
| Q |
210 |
gtcttgatgtgatgatgtc |
228 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
21965997 |
gccttgatgtgatgatgtc |
21965979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 10 - 228
Target Start/End: Original strand, 37074208 - 37074426
Alignment:
| Q |
10 |
ggtggattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatca |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
37074208 |
ggtggattggggttacttagatgaggtgatgatcaaaatgaattttccgactaagtggcggtgttggattatggagtgtgttacaactgctacagcttca |
37074307 |
T |
|
| Q |
110 |
gtgttagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgttagctgttgaag |
209 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37074308 |
gtgttagtgaatggttgctcgaccgatgagtttcattttgaaagaggactacgtcaaggggatcctctttccccttttctgtttctgttagctgctgaag |
37074407 |
T |
|
| Q |
210 |
gtcttgatgtgatgatgtc |
228 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
37074408 |
gtcttgatgtgatgatgtc |
37074426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 12123190 - 12122974
Alignment:
| Q |
10 |
ggtggattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatca |
109 |
Q |
| |
|
|||||||||| | |||||||||||||||||| ||||||| |||||||| || |||||||| ||||||||||||||| |||||||| |||||| | || |
|
|
| T |
12123190 |
ggtggattggaggtacttagatgaggtgatgggtaaaatgtattttccgcatatgtggcgttcttggattatggagtgcgttacaacggctacagcttcc |
12123091 |
T |
|
| Q |
110 |
gtgttagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgttagctgttgaag |
209 |
Q |
| |
|
||| ||||||||||||| ||| | ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
12123090 |
gtgctagtgaatggttgtccggctgatgagtttcattttgaaagtggactccgtcaaggggatcctctttccccgtttctgtttctgttagctgctgaag |
12122991 |
T |
|
| Q |
210 |
gtcttgatgtgatgatg |
226 |
Q |
| |
|
| ||| ||||||||||| |
|
|
| T |
12122990 |
gacttaatgtgatgatg |
12122974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 10 - 228
Target Start/End: Complemental strand, 588388 - 588170
Alignment:
| Q |
10 |
ggtggattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatca |
109 |
Q |
| |
|
|||||||||| | || ||||||||||||||| |||||||||||||||| | ||||||| |||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
588388 |
ggtggattggaggtatttagatgaggtgatggctaaaatgaattttccgcgtctatggcgttcttggattatggagtgtgtcacaacggctacaacatca |
588289 |
T |
|
| Q |
110 |
gtgttagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgttagctgttgaag |
209 |
Q |
| |
|
|||||||| ||||| || ||||| ||||||||||||||||||| |||||| || |||||||||||||||||||| ||| ||||| ||||||||| ||||| |
|
|
| T |
588288 |
gtgttagttaatgggtgtccgactgatgagtttcattttgaaagaggacttcgccaaggggatcctctttccccgtttttgtttttgttagctgctgaag |
588189 |
T |
|
| Q |
210 |
gtcttgatgtgatgatgtc |
228 |
Q |
| |
|
| ||| ||||||||||||| |
|
|
| T |
588188 |
gccttaatgtgatgatgtc |
588170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 22864369 - 22864583
Alignment:
| Q |
14 |
gattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatcagtgt |
113 |
Q |
| |
|
|||||||| ||| | |||||||| |||||||| |||||||||||| | ||||| | |||||||||||| ||| ||||||| || || ||||| |||| |
|
|
| T |
22864369 |
gattggggctacattgatgaggttatgattaagatgaattttccgtgtgtttggcggtcttggattatggaatgtattacaacggcgacgacatctgtgt |
22864468 |
T |
|
| Q |
114 |
tagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgttagctgttgaaggtct |
213 |
Q |
| |
|
|||| ||||| |||||||| ||||||||| || |||||| || || |||||||||||||| ||||| || ||| |||| || ||||| | ||||||| | |
|
|
| T |
22864469 |
tagttaatgggtgcccgactgatgagtttaatcttgaaaggggtctccgtcaaggggatccgctttctccgtttttgttccttttagcagctgaaggttt |
22864568 |
T |
|
| Q |
214 |
tgatgtgatgatgtc |
228 |
Q |
| |
|
||||||||||||| |
|
|
| T |
22864569 |
aaatgtgatgatgtc |
22864583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 20704115 - 20704329
Alignment:
| Q |
14 |
gattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatcagtgt |
113 |
Q |
| |
|
||||||||||| |||| ||||| ||| | |||||||||||||| | |||||| |||||| ||||| ||||||||||| || || | || ||| |
|
|
| T |
20704115 |
gattggggttatctagaggaggttatggtcaaaatgaattttccaagggtgtggcgagtttggataatggaatgtgttacaacggcaaccgcttccgtgc |
20704214 |
T |
|
| Q |
114 |
tagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgttagctgttgaaggtct |
213 |
Q |
| |
|
|||| ||||| |||||||| |||||||||||||| || | ||| || || |||||||||||||||||||| ||| ||||| ||||||| | ||||| || |
|
|
| T |
20704215 |
tagttaatgggtgcccgacggatgagtttcatttcgagagaggtctccggcaaggggatcctctttccccatttttgtttttgttagcagcagaaggcct |
20704314 |
T |
|
| Q |
214 |
tgatgtgatgatgtc |
228 |
Q |
| |
|
| |||| |||||||| |
|
|
| T |
20704315 |
tcatgttatgatgtc |
20704329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 20872159 - 20872373
Alignment:
| Q |
14 |
gattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatcagtgt |
113 |
Q |
| |
|
||||||||||| |||| ||||| ||| | |||||||||||||| | |||||| |||||| ||||| ||||||||||| || || | || ||| |
|
|
| T |
20872159 |
gattggggttatctagaggaggttatggtcaaaatgaattttccaagggtgtggcgagtttggataatggaatgtgttacaacggcaaccgcttccgtgc |
20872258 |
T |
|
| Q |
114 |
tagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgttagctgttgaaggtct |
213 |
Q |
| |
|
|||| ||||| |||||||| |||||||||||||| || | ||| || || |||||||||||||||||||| ||| ||||| ||||||| | ||||| || |
|
|
| T |
20872259 |
tagttaatgggtgcccgacggatgagtttcatttcgagagaggtctccggcaaggggatcctctttccccatttttgtttttgttagcagcagaaggcct |
20872358 |
T |
|
| Q |
214 |
tgatgtgatgatgtc |
228 |
Q |
| |
|
| |||| |||||||| |
|
|
| T |
20872359 |
tcatgttatgatgtc |
20872373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 47550424 - 47550210
Alignment:
| Q |
14 |
gattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatcagtgt |
113 |
Q |
| |
|
|||||||||||| | |||||||| |||||||| |||||||||||| | | ||| | |||||||||||| ||| ||||||| || || ||||| |||| |
|
|
| T |
47550424 |
gattggggttacattgatgaggttatgattaagatgaattttccgtgtgtttcgcggtcttggattatggaatgtattacaacggcgacgacatctgtgt |
47550325 |
T |
|
| Q |
114 |
tagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgttagctgttgaaggtct |
213 |
Q |
| |
|
|||| ||||| || ||||| ||||||||| || | |||| || || |||||||||||||| ||||| || ||| |||| || ||||| | ||||| | | |
|
|
| T |
47550324 |
tagttaatgggtgtccgactgatgagtttaatctcgaaaggggtctccgtcaaggggatccgctttctccgtttttgttccttttagcagctgaagattt |
47550225 |
T |
|
| Q |
214 |
tgatgtgatgatgtc |
228 |
Q |
| |
|
||||||||||||| |
|
|
| T |
47550224 |
aaatgtgatgatgtc |
47550210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 47554889 - 47554675
Alignment:
| Q |
14 |
gattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatcagtgt |
113 |
Q |
| |
|
|||||||||||| | |||||||| |||||||| |||||||||||| | | ||| | |||||||||||| ||| ||||||| || || ||||| |||| |
|
|
| T |
47554889 |
gattggggttacattgatgaggttatgattaagatgaattttccgtgtgtttcgcggtcttggattatggaatgtattacaacggcgacgacatctgtgt |
47554790 |
T |
|
| Q |
114 |
tagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgttagctgttgaaggtct |
213 |
Q |
| |
|
|||| ||||| || ||||| ||||||||| || | |||| || || |||||||||||||| ||||| || ||| |||| || ||||| | ||||| | | |
|
|
| T |
47554789 |
tagttaatgggtgtccgactgatgagtttaatctcgaaaggggtctccgtcaaggggatccgctttctccgtttttgttccttttagcagctgaagattt |
47554690 |
T |
|
| Q |
214 |
tgatgtgatgatgtc |
228 |
Q |
| |
|
||||||||||||| |
|
|
| T |
47554689 |
aaatgtgatgatgtc |
47554675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 24820559 - 24820494
Alignment:
| Q |
161 |
cgtcaaggggatcctctttccccttttctgtttctgttagctgttgaaggtcttgatgtgatgatg |
226 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||| | |||||| ||| ||||||||||| |
|
|
| T |
24820559 |
cgtcaaggggatcctctttccccgtttctgtttctgctagcggctgaaggccttaatgtgatgatg |
24820494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 18768782 - 18768706
Alignment:
| Q |
134 |
gatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgttagctgttgaagg |
210 |
Q |
| |
|
||||||||||||||| | | ||| ||||||| ||||||||||| ||||||||| ||||| || |||| | |||||| |
|
|
| T |
18768782 |
gatgagtttcattttcagagaggtttacgtcagggggatcctctgtccccttttttgtttttgctagcggctgaagg |
18768706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 10 - 228
Target Start/End: Original strand, 15647685 - 15647903
Alignment:
| Q |
10 |
ggtggattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatca |
109 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
15647685 |
ggtggattggtgttacttagatgaggtgatgattaaaatgaattttccgtctaagtggcgttgttggattatggagtgtgttaccactgctacagcatct |
15647784 |
T |
|
| Q |
110 |
gtgttagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgttagctgttgaag |
209 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||| || |||| |||| |
|
|
| T |
15647785 |
gtgttagtgaatggttgtccaaccgatgagtttcattttgaaagaggacttcgtcaaggggatcctctttccccttttctatttctctttgctgccgaag |
15647884 |
T |
|
| Q |
210 |
gtcttgatgtgatgatgtc |
228 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
15647885 |
gtcttgatgtgatgatgtc |
15647903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 23156768 - 23156984
Alignment:
| Q |
10 |
ggtggattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatca |
109 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||| || |||||||| ||||||||||||||| ||| |||| |||||| | || |
|
|
| T |
23156768 |
ggtggattgggggtacttagatgaggtgatgggtaaaatgaattttccgcgtatgtggcgttcttggattatggagtgcgttgcaacggctacagcttcc |
23156867 |
T |
|
| Q |
110 |
gtgttagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgttagctgttgaag |
209 |
Q |
| |
|
||| ||||||||||||| ||||| ||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23156868 |
gtgctagtgaatggttgtccgactgatgagtttcattttgaaagagaactccgtcaaggggatcctctttccccttttctgtttctgttagctgttgaag |
23156967 |
T |
|
| Q |
210 |
gtcttgatgtgatgatg |
226 |
Q |
| |
|
| ||| ||||||||||| |
|
|
| T |
23156968 |
gccttaatgtgatgatg |
23156984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 23 - 228
Target Start/End: Original strand, 17825412 - 17825617
Alignment:
| Q |
23 |
tacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatcagtgttagtgaatg |
122 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || |||| | | |||||||||||||||| ||||||| |||||| ||||||| ||||| |||| |
|
|
| T |
17825412 |
tacttagatgaggtgatggttaaaatgaatttttcgcacctgtggtgctcttggattatggagtgtattacaacggctacagcatcagtattagtaaatg |
17825511 |
T |
|
| Q |
123 |
gttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgttagctgttgaaggtcttgatgtgat |
222 |
Q |
| |
|
|||| ||||| ||||||| |||||||| | ||| || ||||||||||| ||||||||||| ||| ||||| ||||||||| |||||||||| ||||||| |
|
|
| T |
17825512 |
gttgtccgacaaatgagttccattttgagagaggccttcgtcaaggggaccctctttccccatttttgtttttgttagctgctgaaggtcttaatgtgat |
17825611 |
T |
|
| Q |
223 |
gatgtc |
228 |
Q |
| |
|
|||||| |
|
|
| T |
17825612 |
gatgtc |
17825617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 36952798 - 36952638
Alignment:
| Q |
14 |
gattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatcagtgt |
113 |
Q |
| |
|
|||||||| ||| | |||||||| |||||||| |||||||||||| | ||||| | |||||||||||||||| ||||||| || || ||||| |||| |
|
|
| T |
36952798 |
gattggggctacattgatgaggttatgattaagatgaattttccgtgtgtttggcggtcttggattatggagtgtattacaacggcgacgacatctgtgt |
36952699 |
T |
|
| Q |
114 |
tagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcc |
174 |
Q |
| |
|
|||| ||||| |||||||| ||||||||| || |||||| || || |||||||||||||| |
|
|
| T |
36952698 |
tagttaatgggtgcccgactgatgagtttaatcttgaaaagggtctccgtcaaggggatcc |
36952638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 186
Target Start/End: Original strand, 10348373 - 10348485
Alignment:
| Q |
74 |
tggattatggagtgtgttacaactgctacaacatcagtgttagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatc |
173 |
Q |
| |
|
|||||||||||||| || || || || ||| | ||||| || || ||||| || ||||| ||||||||| |||||||| ||| | ||||||||||| | |
|
|
| T |
10348373 |
tggattatggagtgcgtaacgacagcaacagcttcagtcttggtaaatgggtgtccgacagatgagttttgttttgaaagaggcttgcgtcaaggggacc |
10348472 |
T |
|
| Q |
174 |
ctctttccccttt |
186 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
10348473 |
ctctctccccttt |
10348485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 25136557 - 25136461
Alignment:
| Q |
73 |
ttggattatggagtgtgttacaactgctacaacatcagtgttagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggg |
169 |
Q |
| |
|
|||||| ||||||||||||||||| || | |||| ||||| || ||||| |||||||| ||||||||| |||||| | ||| || ||||||||| |
|
|
| T |
25136557 |
ttggatcatggagtgtgttacaacggcaaagacattggtgttggttaatggatgcccgactgatgagtttagttttgagagagggctccgtcaaggg |
25136461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 8e-85; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 10 - 228
Target Start/End: Original strand, 17152428 - 17152646
Alignment:
| Q |
10 |
ggtggattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatca |
109 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17152428 |
ggtggattggggatacttagatgaggtgttgattaaaatgaattttccgcctaagtggcgttcttggattatggagtgtgttacaactgctacagcatca |
17152527 |
T |
|
| Q |
110 |
gtgttagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgttagctgttgaag |
209 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||| | ||||||| ||||| |
|
|
| T |
17152528 |
gtgttagtgaatggttgtccgaccgatgagtttcattttgaaagaggactccttcaaggggatcccctttccccttttctgtttgtattagctgctgaag |
17152627 |
T |
|
| Q |
210 |
gtcttgatgtgatgatgtc |
228 |
Q |
| |
|
| ||| ||||||||||||| |
|
|
| T |
17152628 |
gccttaatgtgatgatgtc |
17152646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 72 - 228
Target Start/End: Complemental strand, 9820602 - 9820446
Alignment:
| Q |
72 |
gttggattatggagtgtgttacaactgctacaacatcagtgttagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaagggga |
171 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||| || ||| ||||||||||| |
|
|
| T |
9820602 |
gttggattatggagtgtgttacaactgcaacagcatcagtgttagtgaatggttgtccgaccgatgagtttcattttgaaagagaactccgtcaagggga |
9820503 |
T |
|
| Q |
172 |
tcctctttccccttttctgtttctgttagctgttgaaggtcttgatgtgatgatgtc |
228 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||| |
|
|
| T |
9820502 |
tcctctttccccttttttgtttgtgttagctgctgaaggccttgatgtgatgatgtc |
9820446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 10 - 148
Target Start/End: Original strand, 9827334 - 9827472
Alignment:
| Q |
10 |
ggtggattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9827334 |
ggtggattggggttacttagatgaggtgataattaaaatgaattttccaactaagtggcgtggttggattatggagtgtgttacaactgctacagcatca |
9827433 |
T |
|
| Q |
110 |
gtgttagtgaatggttgcccgaccgatgagtttcatttt |
148 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
9827434 |
gtgttagtgaatggttgtctgaccgatgagtttcatttt |
9827472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 3516288 - 3516072
Alignment:
| Q |
10 |
ggtggattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatca |
109 |
Q |
| |
|
|||||| ||| | ||||||||||||||| || ||||||| ||||||| ||||||||||| ||||||||||||||| |||||||| |||||| | || |
|
|
| T |
3516288 |
ggtggactggaggtacttagatgaggtgttgggtaaaatgtgttttccgtataagtggcgttcttggattatggagtgcgttacaacggctacagcttct |
3516189 |
T |
|
| Q |
110 |
gtgttagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgttagctgttgaag |
209 |
Q |
| |
|
||| |||||||||| || ||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
3516188 |
gtgctagtgaatggctgtccgactgatgagtttcattttgaaagaggacttcgtcaaggggatcctctttccccgtttctgtttctgttagctgctgaag |
3516089 |
T |
|
| Q |
210 |
gtcttgatgtgatgatg |
226 |
Q |
| |
|
| ||| ||||||||||| |
|
|
| T |
3516088 |
gccttaatgtgatgatg |
3516072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 8596857 - 8596643
Alignment:
| Q |
14 |
gattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatcagtgt |
113 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||| ||||| |||||||| | |
|
|
| T |
8596857 |
gattggagttatttagatgaggtgatgattaaaatgaattttccgcaattgtggcgctcttggattatggagtgtgttacaacggctacgacatcagttt |
8596758 |
T |
|
| Q |
114 |
tagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgttagctgttgaaggtct |
213 |
Q |
| |
|
|||| |||||||| ||||| |||||||| |||||||| | ||| || ||||||||||||||||||||||| ||| |||| ||||||| | |||||||| |
|
|
| T |
8596757 |
tagttaatggttgtccgacagatgagttccattttgagagaggccttcgtcaaggggatcctctttccccgtttttgttcttgttagcagcagaaggtct |
8596658 |
T |
|
| Q |
214 |
tgatgtgatgatgtc |
228 |
Q |
| |
|
| |||| |||||||| |
|
|
| T |
8596657 |
taatgtaatgatgtc |
8596643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 174
Target Start/End: Complemental strand, 23823315 - 23823152
Alignment:
| Q |
11 |
gtggattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatcag |
110 |
Q |
| |
|
||||||||| | ||||| || ||||||||||||||||||||||||||| |||||| | |||||||||||||||||| ||||| || || ||||| | |
|
|
| T |
23823315 |
gtggattggaggtacttggaagaggtgatgattaaaatgaattttccgcacctgtggcgctcttggattatggagtgtgtcacaacggcaacgacatctg |
23823216 |
T |
|
| Q |
111 |
tgttagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcc |
174 |
Q |
| |
|
| ||||| |||||||| ||||| || || || |||||||||| ||| || || ||||||||||| |
|
|
| T |
23823215 |
ttttagtaaatggttgtccgacagacgaattccattttgaaagaggccttcgccaaggggatcc |
23823152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 74 - 226
Target Start/End: Complemental strand, 10755603 - 10755451
Alignment:
| Q |
74 |
tggattatggagtgtgttacaactgctacaacatcagtgttagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatc |
173 |
Q |
| |
|
||||||||||||||| ||||||| || || |||||||||||||| ||||| || ||||| ||||||||| | |||||| || || || |||||||||| |
|
|
| T |
10755603 |
tggattatggagtgtattacaacggcaacgacatcagtgttagttaatgggtgtccgacagatgagtttactcttgaaaggggtctccggcaaggggatc |
10755504 |
T |
|
| Q |
174 |
ctctttccccttttctgtttctgttagctgttgaaggtcttgatgtgatgatg |
226 |
Q |
| |
|
| ||||| || ||| |||| || ||||| | ||||||||| ||||||||||| |
|
|
| T |
10755503 |
cgctttcaccgtttttgttccttttagcagctgaaggtctcaatgtgatgatg |
10755451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 228
Target Start/End: Complemental strand, 30738062 - 30737907
Alignment:
| Q |
73 |
ttggattatggagtgtgttacaactgctacaacatcagtgttagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggat |
172 |
Q |
| |
|
|||||||||||||||||||||||| || || || ||||||||| ||||| || |||| ||||||||| | ||||| | ||| || |||| | ||||| |
|
|
| T |
30738062 |
ttggattatggagtgtgttacaacggcaacgacggtagtgttagttaatggatgtccgattgatgagtttaactttgagagaggtctccgtccaagggat |
30737963 |
T |
|
| Q |
173 |
cctctttccccttttctgtttctgttagctgttgaaggtcttgatgtgatgatgtc |
228 |
Q |
| |
|
|||||||| || ||| ||||| ||||||||| ||||| ||| ||||||||||||| |
|
|
| T |
30737962 |
cctctttctccgtttttgtttttgttagctgccgaaggccttaatgtgatgatgtc |
30737907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 16665579 - 16665413
Alignment:
| Q |
14 |
gattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatcagtgt |
113 |
Q |
| |
|
|||||||| ||| | || ||||| |||||||| |||||||||||| | ||||| | |||||||||||||||| |||||| || | |||| |||| |
|
|
| T |
16665579 |
gattggggctacattgacgaggttatgattaagatgaattttccgtgtgtttggcggtcttggattatggagtgtattacaatggcgatggcatctgtgt |
16665480 |
T |
|
| Q |
114 |
tagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttc |
180 |
Q |
| |
|
|||| ||||| |||||||| ||||||||| || |||||| || || |||||||||||||| ||||| |
|
|
| T |
16665479 |
tagttaatgggtgcccgactgatgagtttaatcttgaaaggggtctccgtcaaggggatccgctttc |
16665413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 49371370 - 49371153
Alignment:
| Q |
11 |
gtggattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatcag |
110 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||| | |||||| | |||||||||||||||||||||| | ||||| |||||| |
|
|
| T |
49371370 |
gtggattggaggtacttagatgaggtgatgattaaaatgaattttccgcatctgtggcgctcttggattatggagtgtgttacagcggctacggcatcag |
49371271 |
T |
|
| Q |
111 |
tgttagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgttagctgttgaagg |
210 |
Q |
| |
|
| ||||| |||||||| ||||| |||||||| |||||||| | ||| || ||||||||||||||||||| ||| ||| ||||| |||||||||||||||| |
|
|
| T |
49371270 |
ttttagtaaatggttgtccgacagatgagttccattttgagagaggcctccgtcaaggggatcctcttttcccgtttttgtttttgttagctgttgaagg |
49371171 |
T |
|
| Q |
211 |
tcttgatgtgatgatgtc |
228 |
Q |
| |
|
|||| |||| |||||||| |
|
|
| T |
49371170 |
tcttaatgtaatgatgtc |
49371153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 52207172 - 52207138
Alignment:
| Q |
23 |
tacttagatgaggtgatgattaaaatgaattttcc |
57 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
52207172 |
tacttagatgatgtgatgattaaaatgaattttcc |
52207138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 32643229 - 32643189
Alignment:
| Q |
155 |
ggactacgtcaaggggatcctctttccccttttctgtttct |
195 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
32643229 |
ggactacgtcaaggtgatccactttccccttttctctttct |
32643189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 18294013 - 18294229
Alignment:
| Q |
10 |
ggtggattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatca |
109 |
Q |
| |
|
|||||||||| | ||||||| |||||||||| ||||||| |||||||| || |||||||| ||||||||||||||| |||||||| |||||| | || |
|
|
| T |
18294013 |
ggtggattggaggtacttaggtgaggtgatgggtaaaatgtattttccgcgtatgtggcgttcttggattatggagtgcgttacaacggctacagcttct |
18294112 |
T |
|
| Q |
110 |
gtgttagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgttagctgttgaag |
209 |
Q |
| |
|
||| ||||||||||||| || || ||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||| |
|
|
| T |
18294113 |
gtgctagtgaatggttgtccaactgatgagttttattttgaaagaggacttcgtcaaggggatcctctttccccttttctatttttgttagctgctgaag |
18294212 |
T |
|
| Q |
210 |
gtcttgatgtgatgatg |
226 |
Q |
| |
|
| ||| |||||| |||| |
|
|
| T |
18294213 |
gccttaatgtgacgatg |
18294229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 228
Target Start/End: Complemental strand, 2895807 - 2895589
Alignment:
| Q |
10 |
ggtggattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatca |
109 |
Q |
| |
|
|||||||||| | ||||||||||| |||||| ||||||| |||||| | |||| | | ||||||||||||||| ||||||||||||||| | ||| |
|
|
| T |
2895807 |
ggtggattggaggtacttagatgaagtgatggataaaatgttatttccgcgtctgtggtgctcttggattatggagtgcgttacaactgctacagcttca |
2895708 |
T |
|
| Q |
110 |
gtgttagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgttagctgttgaag |
209 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||| || || |||||||||||| |||| | ||||| |
|
|
| T |
2895707 |
gtactagtgaatggttgcccgactgatgagtttcattttgaaagaggactccgtcaaggggatcctctatctccgtttctgtttctgctagcggctgaag |
2895608 |
T |
|
| Q |
210 |
gtcttgatgtgatgatgtc |
228 |
Q |
| |
|
| ||| | ||||||||||| |
|
|
| T |
2895607 |
gccttaacgtgatgatgtc |
2895589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 228
Target Start/End: Original strand, 5390198 - 5390353
Alignment:
| Q |
73 |
ttggattatggagtgtgttacaactgctacaacatcagtgttagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggat |
172 |
Q |
| |
|
|||||||||||||||| | ||||| || || |||| |||||||| ||||| |||||||| |||||||| |||||| || || |||||||||||| |
|
|
| T |
5390198 |
ttggattatggagtgtataacaacggcaacggcatctgtgttagttaatgggtgcccgactaatgagtttatccttgaaaggggcctccgtcaaggggat |
5390297 |
T |
|
| Q |
173 |
cctctttccccttttctgtttctgttagctgttgaaggtcttgatgtgatgatgtc |
228 |
Q |
| |
|
|| ||||| || ||| |||| || ||||||| |||||| | ||||||||||||| |
|
|
| T |
5390298 |
ccgctttctccgtttttgttcctattagctgcagaaggtttaaatgtgatgatgtc |
5390353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 12150267 - 12150317
Alignment:
| Q |
161 |
cgtcaaggggatcctctttccccttttctgtttctgttagctgttgaaggt |
211 |
Q |
| |
|
|||||||| ||||||||||| | |||||| ||||| ||||||||||||||| |
|
|
| T |
12150267 |
cgtcaaggtgatcctctttctcgttttctttttctattagctgttgaaggt |
12150317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 118 - 228
Target Start/End: Original strand, 6677320 - 6677430
Alignment:
| Q |
118 |
gaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgttagctgttgaaggtcttgat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6677320 |
gaatggttgcccgaccgatgagtttcattttgaaagaggactacgtcaaggggatcctctttccccttttctgtttctgttagctgctgaaggtcttgat |
6677419 |
T |
|
| Q |
218 |
gtgatgatgtc |
228 |
Q |
| |
|
||||||||||| |
|
|
| T |
6677420 |
gtgatgatgtc |
6677430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 73 - 228
Target Start/End: Complemental strand, 11267566 - 11267411
Alignment:
| Q |
73 |
ttggattatggagtgtgttacaactgctacaacatcagtgttagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggat |
172 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||||||| |||| |||||||| ||||| ||||||||||||||||| | |||||| || |||||||| |
|
|
| T |
11267566 |
ttggattatggaatgtgttacaacagctacgacatcagtgctagtaaatggttgtccgactgatgagtttcattttgagagaggactccgccaaggggac |
11267467 |
T |
|
| Q |
173 |
cctctttccccttttctgtttctgttagctgttgaaggtcttgatgtgatgatgtc |
228 |
Q |
| |
|
||||| ||||| ||| ||||||||||||||| ||||||||| |||| |||||||| |
|
|
| T |
11267466 |
cctctctccccatttttgtttctgttagctgcggaaggtcttaatgttatgatgtc |
11267411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 22112776 - 22112963
Alignment:
| Q |
10 |
ggtggattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatca |
109 |
Q |
| |
|
|||||||||||| ||| | ||||| |||||| |||||||||||| |||| ||||||| |||||||||||||| || || || || ||||| ||| |
|
|
| T |
22112776 |
ggtggattgggggtaccttgatgaagtgatgtctaaaatgaattt-ccgatattatggcgttcctggattatggagtgcgtaacgacagcaacaacttca |
22112874 |
T |
|
| Q |
110 |
gtgttagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgtt |
198 |
Q |
| |
|
||||| || ||||| || ||||| || |||||| |||||||| ||| | ||||||||||| ||||| ||||||||| |||||||||| |
|
|
| T |
22112875 |
gtgttggtaaatgggtgtccgacagacgagttttgttttgaaagaggcttgcgtcaaggggaccctctctccccttttttgtttctgtt |
22112963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 29326798 - 29326584
Alignment:
| Q |
14 |
gattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatcagtgt |
113 |
Q |
| |
|
|||||||| ||| | |||||||| |||||||| |||||||||||| | ||||| | |||||||||||| ||| |||| || || || ||| |||| |
|
|
| T |
29326798 |
gattggggctacattgatgaggttatgattaagatgaattttccgtgtgtttggcggtcttggattatggaatgtattactacggcgacggcatttgtgt |
29326699 |
T |
|
| Q |
114 |
tagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgttagctgttgaaggtct |
213 |
Q |
| |
|
|||| ||||| || ||||| ||||||||| || | |||| || || |||||||||||||| ||||| || ||| |||| || ||||| | ||||||| |
|
|
| T |
29326698 |
tagttaatgggtgtccgactgatgagtttaatctcgaaaggggtctccgtcaaggggatccgctttctccgtttttgttccttttagcagctgaaggttc |
29326599 |
T |
|
| Q |
214 |
tgatgtgatgatgtc |
228 |
Q |
| |
|
||||||||||||| |
|
|
| T |
29326598 |
aaatgtgatgatgtc |
29326584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 57020 - 57236
Alignment:
| Q |
11 |
gtggattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatcag |
110 |
Q |
| |
|
||||||||| | ||| |||||||||| ||| |||||||||||||| | | |||| | || |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
57020 |
gtggattggagatacctagatgaggtaatggctaaaatgaattttctgcgtctgtggtgcacttcgattatggagtgtgttacaatggctacgacatcag |
57119 |
T |
|
| Q |
111 |
tgttagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgttagctgttgaagg |
210 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||| | ||| || ||||||||||| |||||||| || ||| ||||| |||||||||||||||| |
|
|
| T |
57120 |
tgttagtaaatggttgcccgactgatgagtttcattttgagagaggcctccgtcaaggggaccctctttctccgtttttgtttttgttagctgttgaagg |
57219 |
T |
|
| Q |
211 |
tcttgatgtgatgatgt |
227 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
57220 |
tcttaatgtgatgatgt |
57236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 223350 - 223564
Alignment:
| Q |
14 |
gattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatcagtgt |
113 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||| | ||||| | |||||||||||||||||| ||||| || | || ||||||| |
|
|
| T |
223350 |
gattggggttacttagaggaggtgatggttaaaatgaattttccacgtttatggcgatcttggattatggagtgtgtcacaacggccatgacttcagtgt |
223449 |
T |
|
| Q |
114 |
tagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgttagctgttgaaggtct |
213 |
Q |
| |
|
|||| ||||| || || || ||||||||| | |||| | ||| || |||||||||||||||||||| || ||| ||||||||||||||| ||||||| | |
|
|
| T |
223450 |
tagtcaatggatgtcctactgatgagtttaagcttgagagaggccttcgtcaaggggatcctctttctccgtttttgtttctgttagctgctgaaggttt |
223549 |
T |
|
| Q |
214 |
tgatgtgatgatgtc |
228 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
223550 |
tcatgtgatgatgtc |
223564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 10800302 - 10800516
Alignment:
| Q |
14 |
gattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatcagtgt |
113 |
Q |
| |
|
|||||||||||| | |||||||| |||||||| |||||||||||| | | ||| | |||||||||||| ||| ||||||| || || ||||| |||| |
|
|
| T |
10800302 |
gattggggttacattgatgaggttatgattaagatgaattttccgtgtgtttagcggtcttggattatggaatgtattacaacggcgacgacatctgtgt |
10800401 |
T |
|
| Q |
114 |
tagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgttagctgttgaaggtct |
213 |
Q |
| |
|
|||| ||||| || ||||| ||||||||| || | |||| || || |||||||||||||| ||||| || ||| |||| || ||||| | ||||||| | |
|
|
| T |
10800402 |
tagttaatgggtgtccgactgatgagtttaatctcgaaaggggtctccgtcaaggggatccgctttctccgtttttgttccttttagcagctgaaggttt |
10800501 |
T |
|
| Q |
214 |
tgatgtgatgatgtc |
228 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10800502 |
aaatgtgatgatgtc |
10800516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 36493781 - 36493693
Alignment:
| Q |
113 |
ttagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgttagc |
201 |
Q |
| |
|
||||| |||||| |||| || |||||||||| ||| || | || |||| ||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
36493781 |
ttagttaatggtagcccaactgatgagtttcctttagagagggggttacgccaaggtgatcctctttccccttttctttttctgttagc |
36493693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 33143 - 32926
Alignment:
| Q |
11 |
gtggattggggttacttagatgaggtgatgattaaaatgaattttccgactaagtggcgttgttggattatggagtgtgttacaactgctacaacatcag |
110 |
Q |
| |
|
||||||||||||||| | |||||||||||| |||||||||||||||| ||||| | |||||||||||||||||| || || | ||||| || | |
|
|
| T |
33143 |
gtggattggggttaccttgatgaggtgatgtctaaaatgaattttccggtgttatggcgctcttggattatggagtgtgtcacgacaacaacaacttcgg |
33044 |
T |
|
| Q |
111 |
tgttagtgaatggttgcccgaccgatgagtttcattttgaaataggactacgtcaaggggatcctctttccccttttctgtttctgttagctgttgaagg |
210 |
Q |
| |
|
|||| || ||||| ||||||| |||||||| |||| | | | | || ||||||||||||||||| || ||||| |||||||| || || | || || |
|
|
| T |
33043 |
tgttggttaatgggagcccgacaaatgagttttttttttagagaagtcttcgtcaaggggatcctctctctcctttcctgtttctcttggcggcggaggg |
32944 |
T |
|
| Q |
211 |
tcttgatgtgatgatgtc |
228 |
Q |
| |
|
|||| |||| |||||||| |
|
|
| T |
32943 |
tcttaatgttatgatgtc |
32926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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