View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6403_high_8 (Length: 332)
Name: NF6403_high_8
Description: NF6403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6403_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 30 - 325
Target Start/End: Original strand, 10887909 - 10888204
Alignment:
| Q |
30 |
actcctccggtcaattttgcagaaatgtcgacaacttcgtcttcatcatcatcgtaatgaaagatgaaggcagtgccgaaaaaagcaataaggtagacga |
129 |
Q |
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| T |
10887909 |
actcctccggtgggttttgcagaattgtcgactacttcgtcttcatcatcatcgtaatgaatgatgaaggcagtgccgaagaaagcaataaggtagacga |
10888008 |
T |
|
| Q |
130 |
aggaagcgatgagggaaactacagcaacaatctcagagactgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaa |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10888009 |
aggaagcgatgagggaaactacagcaacaatctcagagactgtgaggatgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaa |
10888108 |
T |
|
| Q |
230 |
gtacgcggcggagaagaagagaccaaagaaaacagcgtttgttaaatacagtgaagaagaaggttgttgtgactgtgaatcctgctgctgcctttg |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10888109 |
gtacgcggcggagaagaagagaccaaagaaaacagcgtttgttaaatacagtgaagaagaaggttgttgtgactgtgaatcctgctgctgcctttg |
10888204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 69 - 281
Target Start/End: Complemental strand, 10866426 - 10866214
Alignment:
| Q |
69 |
tcttcatcatcatcgtaatgaaagatgaaggcagtgccgaaaaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagaga |
168 |
Q |
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||||| || ||||||||||||| |||||||||| ||||||| |||| ||||||||||| |||||||||||||||||||| | ||| | ||||||||||| |
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| T |
10866426 |
tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga |
10866327 |
T |
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| Q |
169 |
ctgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacagcgtt |
268 |
Q |
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| T |
10866326 |
ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt |
10866227 |
T |
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| Q |
269 |
tgttaaatacagt |
281 |
Q |
| |
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|||||| |||||| |
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| T |
10866226 |
tgttaagtacagt |
10866214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 69 - 281
Target Start/End: Original strand, 10873879 - 10874091
Alignment:
| Q |
69 |
tcttcatcatcatcgtaatgaaagatgaaggcagtgccgaaaaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagaga |
168 |
Q |
| |
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||||| || ||||||||||||| |||||||||| ||||||| |||| ||||||||||| |||||||||||||||||||| | ||| | ||||||||||| |
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| T |
10873879 |
tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga |
10873978 |
T |
|
| Q |
169 |
ctgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacagcgtt |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| | || |
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| T |
10873979 |
ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt |
10874078 |
T |
|
| Q |
269 |
tgttaaatacagt |
281 |
Q |
| |
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|||||| |||||| |
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| T |
10874079 |
tgttaagtacagt |
10874091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 69 - 281
Target Start/End: Original strand, 10878950 - 10879162
Alignment:
| Q |
69 |
tcttcatcatcatcgtaatgaaagatgaaggcagtgccgaaaaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagaga |
168 |
Q |
| |
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||||| || ||||||||||||| |||||||||| ||||||| |||| ||||||||||| |||||||||||||||||||| | ||| | ||||||||||| |
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| T |
10878950 |
tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga |
10879049 |
T |
|
| Q |
169 |
ctgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacagcgtt |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| | || |
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| T |
10879050 |
ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt |
10879149 |
T |
|
| Q |
269 |
tgttaaatacagt |
281 |
Q |
| |
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|||||| |||||| |
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| T |
10879150 |
tgttaagtacagt |
10879162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 69 - 281
Target Start/End: Original strand, 10884021 - 10884233
Alignment:
| Q |
69 |
tcttcatcatcatcgtaatgaaagatgaaggcagtgccgaaaaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagaga |
168 |
Q |
| |
|
||||| || ||||||||||||| |||||||||| ||||||| |||| ||||||||||| |||||||||||||||||||| | ||| | ||||||||||| |
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| T |
10884021 |
tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga |
10884120 |
T |
|
| Q |
169 |
ctgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacagcgtt |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| | || |
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| T |
10884121 |
ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt |
10884220 |
T |
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| Q |
269 |
tgttaaatacagt |
281 |
Q |
| |
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|||||| |||||| |
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| T |
10884221 |
tgttaagtacagt |
10884233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 48 - 288
Target Start/End: Complemental strand, 39676020 - 39675780
Alignment:
| Q |
48 |
gcagaaatgtcgacaacttcgtcttcatcatcatcgtaatgaaagatgaaggcagtgccgaaaaaagcaataaggtagacgaaggaagcgatgagggaaa |
147 |
Q |
| |
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|||| |||||| ||||||| ||||| || ||||||||||||| |||||||||| ||| || ||||| ||||||||| | | |||| |||||||||| |
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| T |
39676020 |
gcagcaatgtcagcaacttcatcttcttcttcatcgtaatgaaggatgaaggcaacgccaaagaaagccgtaaggtagataaggcaagcaatgagggaaa |
39675921 |
T |
|
| Q |
148 |
ctacagcaacaatctcagagactgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaa |
247 |
Q |
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||| ||||| |||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||| |
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| T |
39675920 |
ctagagcaagaatctcggagattgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaa |
39675821 |
T |
|
| Q |
248 |
gagaccaaagaaaacagcgtttgttaaatacagtgaagaag |
288 |
Q |
| |
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|||||| ||||||| || ||||||||| || |||||||||| |
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| T |
39675820 |
gagaccgaagaaaaaagtgtttgttaagtaaagtgaagaag |
39675780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 93 - 286
Target Start/End: Complemental strand, 10045968 - 10045775
Alignment:
| Q |
93 |
atgaaggcagtgccgaaaaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagagactgtgaggacgtggagaggtgtag |
192 |
Q |
| |
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|||||| || ||||||| ||||| |||||||| | |||||||| ||||||||||| ||| | |||||||||||| |||||| || || |||||||| | |
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| T |
10045968 |
atgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaagaggtgtgg |
10045869 |
T |
|
| Q |
193 |
aggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacagcgtttgttaaatacagtgaaga |
286 |
Q |
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||||||||||||| ||||||||||||| ||||||||| |||||| |||||||||| ||||| ||||||| ||||||||||| || |||||||| |
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| T |
10045868 |
aggttcggatcttctcacgccacctgtgaagaagaaaatacgcgacggagaagaaaagaccgaagaaaattgcgtttgttaagtagagtgaaga |
10045775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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