View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6403_low_1 (Length: 593)
Name: NF6403_low_1
Description: NF6403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6403_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 513; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 20 - 583
Target Start/End: Original strand, 33412969 - 33413533
Alignment:
| Q |
20 |
gttcagtgatggttaatgaatctaaaaagttgccgcaactcgtttatcatccattgcatgcaattaactacgattttgagcactattaaccataattgta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33412969 |
gttcagtgatggttaatgaatctaaaaagttgccgcaactcgtttatcatccattgcatgcaattaactacgattttgagcactattaaccataattgta |
33413068 |
T |
|
| Q |
120 |
gtttagctttcctttttatacttttggtttagtcacaagacaaacctaaggtattcttccaacacttgatgaggatctccttctgtcttttacaagaagg |
219 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33413069 |
gtttagctttcctttttttacttttggtttagtcacaagacaaacctaaggtatttttccaacacttgatgaggatctccttctgtcttttacaagaagg |
33413168 |
T |
|
| Q |
220 |
atccaattcttgaatttccttcagtttttgggaagacatgcttttattatgctagaggagatg----catctccatatgaagaaaacattgttgatgaac |
315 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33413169 |
atccaattcttgaatttccttcagtttttggcaagacatgcttttattatgctagaggagatatcaccatctccatatgaagaaaacattgttgatgaac |
33413268 |
T |
|
| Q |
316 |
gatatcctttcatgtcacttcttttgaatggcaagcacatttttgtatatggtcatcactacttacagcattgtacctaggaccaactactcattgaacc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
33413269 |
gatatcctttcatgtcacttcttttgaatggcaagcacatttttgtatatggtca---ctacttacaacattgtacctaagaccaactactcattgaacc |
33413365 |
T |
|
| Q |
416 |
ttggagctgctgcaagtgtttgtggtgtcatcaacggatcaatgactattgcacatgtttttgcttctatttattttagtgtgtgatcgaactgattgtg |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33413366 |
ttggagctgctgcaagtgtttgtggtgtcatcaacggatcaatgactattgcacatgtttttgcttctatttattttagtgtgtgatcgaactgattgtg |
33413465 |
T |
|
| Q |
516 |
tctaagacctatcatattcagtgccattgttcttctaattgtaaacatgatgtatgcaatggcctatg |
583 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33413466 |
tctaagacctatcatattcagtgccattgttcttctaattgtaaacatgatgtatgcaatggcctatg |
33413533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 27 - 582
Target Start/End: Original strand, 33420108 - 33420677
Alignment:
| Q |
27 |
gatggttaatgaatctaaaaagttgccgcaactcgtttatcatccattgcatgcaattaactacgattttgagcactattaaccataattgtagtttagc |
126 |
Q |
| |
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|||||||||||||| || |||| || |||||||| ||||||||| |||||| | |||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
33420108 |
gatggttaatgaatatataaaggtgtcgcaactcatttatcatcaattgcacgtaattaactacaattttgagcactattaaccataattgtaatttagc |
33420207 |
T |
|
| Q |
127 |
tttcctttttat-acttttggtttagtcacaagacaaacctaaggtattcttccaacacttgatgaggatctccttctgtcttttacaagaaggatccaa |
225 |
Q |
| |
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|| ||||| | |||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| || |
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| T |
33420208 |
ttaatttttttttacttttggttcactcatgagacaaacctaaggtattcttccaacacttgatgaggatctccttatgtcttttacttgaaggatcaaa |
33420307 |
T |
|
| Q |
226 |
ttcttgaatttccttcagtttttgggaagacatgc----ttttattatgcta---gaggagatg----catctccatatgaagaaaacattgttgatgaa |
314 |
Q |
| |
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|||||||||||||||| ||||||||| |||||||| ||||||| ||||| |||||||| ||||||||| | |||||||||||||||||||| |
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| T |
33420308 |
ttcttgaatttccttcggtttttggggagacatgcatgcttttattttgctacaagaggagatatcaccatctccatctaaagaaaacattgttgatgaa |
33420407 |
T |
|
| Q |
315 |
cgatatcctttcatgtcacttcttttgaa--tggcaagcacatttttgtatatggtcatcactacttacagcattgtacctaggacc---aactactcat |
409 |
Q |
| |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||| |||| |||||||||| |
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|
| T |
33420408 |
atatatcatttcatgtcacttcttttgaacttggcaagcacatttttgtatatggtcg---ctacttacatcattgtacctatgaccggaaactactcat |
33420504 |
T |
|
| Q |
410 |
tgaaccttggagctgctgcaagtgtttgtggtgtcatcaacggatcaatgactattgcacatgtttttgcttctatttattttagtgtgtgatcgaactg |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||| |||||||||| |||||||||||| ||||||| ||| |||| |||||| | |
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| T |
33420505 |
tgaaccttggagctgctgcaagtgtttgtggtgttgtcgtcggatcaatggctattgcacaagtttttgcttctgtttatttcagtatgtggtcgaaccg |
33420604 |
T |
|
| Q |
510 |
attgtgtctaagacctatcatattcagtgccattgttcttctaattgtaaacatgatgtatgcaatggcctat |
582 |
Q |
| |
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|| ||||||||||| |||||||||||||| ||||||| ||||||||||||||| | |||||||||||||||| |
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| T |
33420605 |
atcgtgtctaagacttatcatattcagtgttattgttcatctaattgtaaacatcaagtatgcaatggcctat |
33420677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 35 - 416
Target Start/End: Original strand, 33491409 - 33491796
Alignment:
| Q |
35 |
atgaatctaaaaagttgccgcaactc-gtttatcatccattgcatgcaattaactacgattttgagcactattaaccataattgtagtttagctttcctt |
133 |
Q |
| |
|
|||||| |||||||||| |||||||| ||||||||||||||||| | |||||||||| |||||| ||||||||||||||||||||||||||||||| || |
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|
| T |
33491409 |
atgaatataaaaagttgtcgcaactctgtttatcatccattgcacgtaattaactacaattttg-gcactattaaccataattgtagtttagctttattt |
33491507 |
T |
|
| Q |
134 |
tttat--acttttggtttagtcacaagacaaacctaaggtattcttccaacacttgatgaggatctccttctgtcttttacaagaaggatccaattcttg |
231 |
Q |
| |
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||| | |||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||| |
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| T |
33491508 |
tttttttacttttggtttacttacaagacaaacctaaggttttcttccaacacttgatgaggatcttctt-tatcttttacaagaaggatccaattcttg |
33491606 |
T |
|
| Q |
232 |
aatttccttcag-tttttgggaagacatgcttttattatgctagaggagat----gcatctccatatgaagaaaacattgttgatgaacgatatcctttc |
326 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||| || |||||||| ||||||||| |||||||||||||||||||||| |||||| |||| |
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|
| T |
33491607 |
aatttccttcagttttttgggaagacatggttttatta--ctggaggagatatcaccatctccatctgaagaaaacattgttgatgaaagatatcatttc |
33491704 |
T |
|
| Q |
327 |
atgtcacttcttttgaa--tggcaagcacatttttgtatatggtcatcactacttacagcattgtacctaggac---caactactcattgaacct |
416 |
Q |
| |
|
||| ||||||||||||| || ||||||||||||||||||||| |||||| ||||| ||||||||||||||| |||||||||||||||||| |
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|
| T |
33491705 |
atgccacttcttttgaacctgacaagcacatttttgtatatgg---tcactatttacaacattgtacctaggaccgacaactactcattgaacct |
33491796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 232 - 583
Target Start/End: Complemental strand, 28812368 - 28812008
Alignment:
| Q |
232 |
aatttccttcagtttttgggaagacatgcttttattatgcta---gaggagatg----catctccatatgaagaaaacattgttgatgaacgatatcctt |
324 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||| | |||||||| ||||||||| ||||||||||||||| |||||| |||||| || |
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|
| T |
28812368 |
aatttccttcagtttttgggaagacacgcttttatcatgcaaccagaggagatatcaccatctccatctgaagaaaacattgtcgatgaaagatatcatt |
28812269 |
T |
|
| Q |
325 |
tcatgtcacttcttttgaa--tggcaagcacatttttgtatatggtcatcactacttacagcattgtacctaggac---caactactcattgaaccttgg |
419 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||||||| | | ||| ||||||||||||||||| |
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|
| T |
28812268 |
tcatgtcacttcttttgaacttggcaagcacatttttgtatatggtcaa---tacttacatcgttgtacctacggctgacaattactcattgaaccttgg |
28812172 |
T |
|
| Q |
420 |
agctgctgcaagtgtttgtggtgtcatcaacggatcaatgactattgcacatgtttttgcttctatttattttagtgtgtgatcgaactgattgtgtcta |
519 |
Q |
| |
|
|||||||||||||||||| |||||| ||| |||||||||| || ||||||| |||||||||||| ||||||| |||| ||| |||||| ||| || |||| |
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|
| T |
28812171 |
agctgctgcaagtgtttgcggtgtcgtcatcggatcaatggctgttgcacaggtttttgcttctgtttatttcagtgcgtggtcgaaccgatcgtatcta |
28812072 |
T |
|
| Q |
520 |
agacctatcatattcagtgccattgttcttctaattgtaaacatgatgtatgcaatggcctatg |
583 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| | |||| |||||| ||||||||| ||||||||| |
|
|
| T |
28812071 |
agacctctcatattcagtaccattgttcttatgattggaaacatcatgtatgcattggcctatg |
28812008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 28812533 - 28812407
Alignment:
| Q |
110 |
cataattgtagtttagctttccttttta-tacttttggtttagtcacaagacaaacctaaggtattcttccaacacttgatgaggatctccttctgtc-t |
207 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||||||||||| ||| | | ||| |||||||||||||||||| ||||||||||| |||||||||| | |
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| T |
28812533 |
cataattggagtttagctttaattttttgtacttttggtttactcatacgcaaaatctaaggtattcttccaacttttgatgaggatatccttctgtctt |
28812434 |
T |
|
| Q |
208 |
tttacaagaaggatccaattcttgaat |
234 |
Q |
| |
|
||| | |||||||||||||||||||| |
|
|
| T |
28812433 |
ttttcttgaaggatccaattcttgaat |
28812407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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