View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6403_low_12 (Length: 248)
Name: NF6403_low_12
Description: NF6403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6403_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 23 - 233
Target Start/End: Original strand, 6809571 - 6809781
Alignment:
| Q |
23 |
cattattctcctttttgcaatagcctcattttctgtattgctctttattttagctatgtcatcaccaccattctcttcaacattaggacttggtcctgtg |
122 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6809571 |
cattgttctccttttcgcaatagcctcattttctgtattgctctttattttacctatgtcatcaccaccattctcttcaacattagaacttggtcctgtg |
6809670 |
T |
|
| Q |
123 |
aaatcatacttgaataaagaagcatgctgaatcagttcattcattacttgcttagcccgaatatgtttttccttcctcctttggattttctctacccatg |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6809671 |
aaatcatacttgaataaagaagcatgctgaatcagttcattcattacttgcttagcccgaatatgtttttccttcctcctttggattttctctacccatg |
6809770 |
T |
|
| Q |
223 |
ttgctcctatg |
233 |
Q |
| |
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||||||||||| |
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| T |
6809771 |
ttgctcctatg |
6809781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 28 - 233
Target Start/End: Original strand, 6817705 - 6817910
Alignment:
| Q |
28 |
ttctcctttttgcaatagcctcattttctgtattgctctttattttagctatgtcatcaccaccattctcttcaacattaggacttggtcctgtgaaatc |
127 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| | |||| ||||||||||| |||||||||| ||||||||||||||| ||||| |
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| T |
6817705 |
ttctccttttcgcaatagcctcattttctgtattgctctttattttatccatgttatcaccaccatgatcttcaacatgaggacttggtcctgtaaaatc |
6817804 |
T |
|
| Q |
128 |
atacttgaataaagaagcatgctgaatcagttcattcattacttgcttagcccgaatatgtttttccttcctcctttggattttctctacccatgttgct |
227 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
6817805 |
atacttgtataaagaagcgcactgaatcagttcattcattacttgcttagcccgaataagttttttcttcctcctttggattttctctacccatgttgct |
6817904 |
T |
|
| Q |
228 |
cctatg |
233 |
Q |
| |
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|||||| |
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| T |
6817905 |
cctatg |
6817910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 27 - 233
Target Start/End: Original strand, 6832218 - 6832424
Alignment:
| Q |
27 |
attctcctttttgcaatagcctcattttctgtattgctctttattttagctatgtcatcaccaccattctcttcaacattaggacttggtcctgtgaaat |
126 |
Q |
| |
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||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||| |||||||| ||||||||| ||||||||||||||| |||| |
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| T |
6832218 |
attctccttttctcaataacttcattttctgtattgctctttattttatctatgtcaccaccaccaagttcttcaacacgaggacttggtcctgtaaaat |
6832317 |
T |
|
| Q |
127 |
catacttgaataaagaagcatgctgaatcagttcattcattacttgcttagcccgaatatgtttttccttcctcctttggattttctctacccatgttgc |
226 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
6832318 |
catacttgtataaagaagcgtgctgaatcagttcattcatcacttgcttagcccgaatgtgtttttccttcttcctttggattttctctacccatgttgc |
6832417 |
T |
|
| Q |
227 |
tcctatg |
233 |
Q |
| |
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||||||| |
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|
| T |
6832418 |
tcctatg |
6832424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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