View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6403_low_15 (Length: 240)
Name: NF6403_low_15
Description: NF6403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6403_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 41570416 - 41570204
Alignment:
| Q |
10 |
gcagagacagtggaggcgatgattagtaacacggcgaggagtgagaggaaaatgatcttcttctttgaagatctaggtttggtagtgtttattataggtt |
109 |
Q |
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| T |
41570416 |
gcagagatagtggaggcgatgattagtaacacggcgaggagtgagaggaaaatgatcttcttctttgaagatctaggtttggtagtgtttattataggtt |
41570317 |
T |
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| Q |
110 |
gggagggtgtcgagccaccagggtcggatagtcctaaccttccgtactccattgtgaagtgtgaagtgttaagtgaaaaaataagagttgaggaagtaat |
209 |
Q |
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| T |
41570316 |
gggagggtgtcgagccaccagggtcggatagtcctaaccttccgtactccattgtgaagtgtgaagtgttaagtgaaaaaataagag-tgaggaagtaat |
41570218 |
T |
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| Q |
210 |
ggacttatagaagt |
223 |
Q |
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|||||||||||||| |
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| T |
41570217 |
ggacttatagaagt |
41570204 |
T |
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