View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6403_low_16 (Length: 238)
Name: NF6403_low_16
Description: NF6403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6403_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 5399773 - 5399987
Alignment:
| Q |
1 |
gcatgtcctcttttttgatactttattcacatttatgctattgtatttgtgcatgcaatcttactagtaaaacaaatagattttatctcgagtcatcggt |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5399773 |
gcatgtcctctttttttatactttattcacatttatgctattgtatttgtgcatgcaatcttactagtaaaacaaatagattttatctcgagtcatcggt |
5399872 |
T |
|
| Q |
101 |
tcagtggtaagagtttgactttgtaaccttaagagacgaagtttgaatatccttagagacgattggtgtcactttaaattaggggataattt-ccccttt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5399873 |
tcagtggtaagagtttgactttgtaaccttaagagacgaagtttgaatatccttagagacgattggtgtcactttaaattaggggataatttcccccttt |
5399972 |
T |
|
| Q |
200 |
cctcaaattgttttt |
214 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5399973 |
cctcaaattgttttt |
5399987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 12556936 - 12556897
Alignment:
| Q |
105 |
tggtaagagtttgactttgtaaccttaagagacgaagttt |
144 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
12556936 |
tggtaagagtttgactttgtaacatcaagagacgaagttt |
12556897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 30519517 - 30519477
Alignment:
| Q |
104 |
gtggtaagagtttgactttgtaaccttaagagacgaagttt |
144 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| ||||||||| |
|
|
| T |
30519517 |
gtggtaagagtttgattttgtaaacttaagaaacgaagttt |
30519477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 40585301 - 40585251
Alignment:
| Q |
99 |
gttcagtggtaagagtttgactttgtaaccttaagagacgaagtttgaata |
149 |
Q |
| |
|
||||||| |||||| ||||| |||||||| |||||||||||||||| |||| |
|
|
| T |
40585301 |
gttcagtagtaagaatttgattttgtaactttaagagacgaagtttaaata |
40585251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University