View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6403_low_4 (Length: 372)

Name: NF6403_low_4
Description: NF6403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6403_low_4
NF6403_low_4
[»] chr3 (2 HSPs)
chr3 (163-359)||(24265550-24265746)
chr3 (7-105)||(24265394-24265492)
[»] chr7 (4 HSPs)
chr7 (190-277)||(31113377-31113464)
chr7 (190-273)||(31197136-31197219)
chr7 (191-273)||(31054591-31054673)
chr7 (190-273)||(31066135-31066218)
[»] chr4 (2 HSPs)
chr4 (178-260)||(42764353-42764435)
chr4 (181-274)||(42732955-42733048)
[»] chr5 (1 HSPs)
chr5 (172-276)||(37020080-37020184)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 163 - 359
Target Start/End: Original strand, 24265550 - 24265746
Alignment:
Q  163 caccttcaaagccatgagaaggctaaggaagcaatattttactcatacaataaacacatcaatggttttgctgctgtacttgaagtagaagaagcagcaa 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24265550 caccttcaaagccatgagaaggctaaggaagcaatattttactcatacaataaacacatcaatggttttgctgctgtacttgaagtagaagaagcagcaa 24265649  T
Q  263 aaattgcaagtaagtgaataatctcccaaatattcttatgcatgagatatgatgttaattattttttatgggtgcagaacatccaaatgtagtgtct 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24265650 aaattgcaagtaagtgaataatctcccaaatattcttatgcatgagatatgatgttaattattttttatgggtgcagaacatccaaatgtagtgtct 24265746  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 24265394 - 24265492
Alignment:
Q  7 aaacccttctgcaagtgatctccaatctgcaacaaatttccattacaatttactaggctcacacttgggaaggtatattctatagaatatttcaataaa 105  Q
    ||||||||| |||||||||||||||||||| ||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24265394 aaacccttcagcaagtgatctccaatctgctacagactcccattacaatttactaggctcacacttgggaaggtatattctatagaatatttcaataaa 24265492  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 277
Target Start/End: Complemental strand, 31113464 - 31113377
Alignment:
Q  190 gaagcaatattttactcatacaataaacacatcaatggttttgctgctgtacttgaagtagaagaagcagcaaaaattgcaagtaagt 277  Q
    ||||||||| |||| ||||| |||||||| || ||||| ||||| ||| | |||||||  |||||||| ||| |||||||||||||||    
T  31113464 gaagcaataatttattcatataataaacagattaatggctttgcagctatgcttgaagaggaagaagctgcacaaattgcaagtaagt 31113377  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 273
Target Start/End: Original strand, 31197136 - 31197219
Alignment:
Q  190 gaagcaatattttactcatacaataaacacatcaatggttttgctgctgtacttgaagtagaagaagcagcaaaaattgcaagt 273  Q
    ||||||||  |||| ||||| || |||||||||||||| ||||||||| |||||||||  |||||||| ||| | |||||||||    
T  31197136 gaagcaatcatttattcatataacaaacacatcaatggctttgctgctctacttgaagatgaagaagctgcagatattgcaagt 31197219  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 273
Target Start/End: Complemental strand, 31054673 - 31054591
Alignment:
Q  191 aagcaatattttactcatacaataaacacatcaatggttttgctgctgtacttgaagtagaagaagcagcaaaaattgcaagt 273  Q
    |||||||| |||| ||||| |||||||| |||||||| ||||| ||| |||||||||  ||||| || ||| |||||||||||    
T  31054673 aagcaataatttattcatataataaacagatcaatggctttgcagctatacttgaagaggaagaggctgcacaaattgcaagt 31054591  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 273
Target Start/End: Complemental strand, 31066218 - 31066135
Alignment:
Q  190 gaagcaatattttactcatacaataaacacatcaatggttttgctgctgtacttgaagtagaagaagcagcaaaaattgcaagt 273  Q
    ||||||||| |||| || ||||||||||| |||||||| ||||| ||| | |||||||  |||||||| ||| || ||||||||    
T  31066218 gaagcaataatttattcttacaataaacagatcaatggctttgcagctatgcttgaagaggaagaagctgcacaacttgcaagt 31066135  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 42764435 - 42764353
Alignment:
Q  178 gagaaggctaaggaagcaatattttactcatacaataaacacatcaatggttttgctgctgtacttgaagtagaagaagcagc 260  Q
    |||||||| || ||||||||||||||||| || |||| | | || ||||| ||||||||  ||||||| | ||||||||||||    
T  42764435 gagaaggccaaagaagcaatattttactcttataatagatatattaatggatttgctgcaatacttgatgaagaagaagcagc 42764353  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 274
Target Start/End: Original strand, 42732955 - 42733048
Alignment:
Q  181 aaggctaaggaagcaatattttactcatacaataaacacatcaatggttttgctgctgtacttgaagtagaagaagcagcaaaaattgcaagta 274  Q
    ||||| || ||||||||||||||||| || |||| | | || ||||| ||||||||  ||||||| | ||| |||||||||||  |||||||||    
T  42732955 aaggccaaagaagcaatattttactcttataatagatatattaatggatttgctgcaatacttgatgaagatgaagcagcaaagcttgcaagta 42733048  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 276
Target Start/End: Complemental strand, 37020184 - 37020080
Alignment:
Q  172 agccatgagaaggctaaggaagcaatattttactcatacaataaacacatcaatggttttgctgctgtacttgaagtagaagaagcagcaaaaattgcaa 271  Q
    |||||||||||||| |||||| || |  | ||||| |||||||| || || ||||| ||||||||  | |||||||  ||||| ||| |||| |||||||    
T  37020184 agccatgagaaggcaaaggaaacagtgatgtactcttacaataagcatataaatggatttgctgcactgcttgaagatgaagaggcatcaaagattgcaa 37020085  T
Q  272 gtaag 276  Q
    |||||    
T  37020084 gtaag 37020080  T

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