View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6403_low_5 (Length: 368)
Name: NF6403_low_5
Description: NF6403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6403_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 25 - 321
Target Start/End: Original strand, 25018449 - 25018745
Alignment:
| Q |
25 |
cacacacactctttcatttttcatcttcgcgtgtggcggttattaaaacgacgacgttccgtgtcgtatcgtttcgtttctctcttagggttaattttcc |
124 |
Q |
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| T |
25018449 |
cacacacactctttcatttttcatcttcgcgtgtggcggttattaaaacgacgacgttcggtgtcgtatcgtttcgtttctctcttagggttaattttcc |
25018548 |
T |
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| Q |
125 |
cctcctttcttcatatgcttcttcgttaaccatagttaacgaataagtgcttttctcacaacgtgcttttcttctagggttggtgcttgctctttagggc |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25018549 |
cctcctttcttcatatgcttcttcgttaaccatagttaacgaataagtgcttttttcacaacgtgcttttcttctagggttggtgcttgctctttagggc |
25018648 |
T |
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| Q |
225 |
ttttcaatttcaattttttaagtgatatgaatgggttagtaatataatagattgaatttgatagtgaaattggtgcgatttcgcggtgaaaagaggt |
321 |
Q |
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| T |
25018649 |
ttttcaatttcaatttttttagtgatatgaatgggttagtaatataatagattgaatttgatagtgaaattggtgcgatttcgcggtgaaaagaggt |
25018745 |
T |
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