View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6403_low_7 (Length: 336)
Name: NF6403_low_7
Description: NF6403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6403_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 6 - 321
Target Start/End: Complemental strand, 26305533 - 26305217
Alignment:
| Q |
6 |
agatattaaaagatggcttggtgaagtgagaggaagagacctacctgaatcctttgcttggtcctacaagaggttgttgaatcataccttattaatcatt |
105 |
Q |
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| T |
26305533 |
agatattaaaagatggcttggtgaagtgagaggaagagacctacctgaatcctttgcttggtcctacaagaggttgttgaatcataccttattaatcatt |
26305434 |
T |
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| Q |
106 |
atttccttgctttagtccattttctcaacctcannnnnnn-aacctttaactatatatgtatatccataatcaatttttgtaactaacaattattgaact |
204 |
Q |
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| T |
26305433 |
atttccttgctttagtccattttctcaacctcattttttttaacctttaactatatatgtatatccataatcaatttttgtaactaacaattattgaact |
26305334 |
T |
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| Q |
205 |
ataggaggtacaagagtggatatgtctggcaggatttaatggatgacgacctcataacccccatttctgataatgaatacgtcctcaaaggatcacaaat |
304 |
Q |
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| T |
26305333 |
ataggaggtacaagagtggatatgtctggcaggatttaatggatgacgacctaataacccccatttctgataatgaatacgtcctcaaaggatcacaaat |
26305234 |
T |
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| Q |
305 |
ccacactaccccctttg |
321 |
Q |
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| T |
26305233 |
ccacactaccccttttg |
26305217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 781293 - 781223
Alignment:
| Q |
11 |
ttaaaagatggcttggtgaagtgagaggaagagacctacctgaatcctttgcttggtcctacaagaggttg |
81 |
Q |
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|||| ||||||||||||||| ||| ||||| |||| | ||||||||||||||||| |||| |||||||||| |
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| T |
781293 |
ttaagagatggcttggtgaattgaaaggaaaagacttgcctgaatcctttgcttgatcctccaagaggttg |
781223 |
T |
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