View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6403_low_9 (Length: 328)
Name: NF6403_low_9
Description: NF6403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6403_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 5399526 - 5399212
Alignment:
| Q |
1 |
ccagcatgtgaatcttgacccattagagggtccaaatttagaggtgaagcttgagc------atccaacactcttaactctaataccaagaaaccgagaa |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
5399526 |
ccagcatgtgaatcttgacccattagagggtccaaatttagaggtgaagcttgagcttgaccatcgaacactcttaactctaataccaagaaaccgagaa |
5399427 |
T |
|
| Q |
95 |
gaagacaagtttgtggaagaaacttgtgaagtgattaaagacttagaatttgaaatgatgggttggtgagttatgcatgtgattgaagacattgctgtgt |
194 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5399426 |
gaagacaagtttgtggaagaaacttgcgaagtgattaaagacttagaatttgaaataatgggttggtgagttatgcatgtgattgaagacattgttgtgt |
5399327 |
T |
|
| Q |
195 |
ttgagtttgagtttgagttcaacaacaaaacttgtttcagttctgtgttctactatgttctatgttctatccatccacatgtctgaaaactgaaacatgt |
294 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5399326 |
ttgagtttg------agttcaacaacaaaacttgtttcagttctgtgttctactatgttctatgttctatccatccacatgtctgaaaactgaaacatat |
5399233 |
T |
|
| Q |
295 |
ataaggaagtgattctgtgct |
315 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
5399232 |
ataaggaagtgattctgtgct |
5399212 |
T |
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