View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6404_high_5 (Length: 360)

Name: NF6404_high_5
Description: NF6404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6404_high_5
NF6404_high_5
[»] chr1 (3 HSPs)
chr1 (6-273)||(10033308-10033573)
chr1 (272-354)||(10034274-10034356)
chr1 (272-354)||(10020609-10020689)
[»] chr4 (3 HSPs)
chr4 (23-141)||(41067757-41067875)
chr4 (142-177)||(41067694-41067729)
chr4 (177-267)||(8656683-8656773)
[»] chr3 (3 HSPs)
chr3 (23-141)||(8479391-8479509)
chr3 (177-273)||(2899284-2899380)
chr3 (143-177)||(8479322-8479356)
[»] chr5 (2 HSPs)
chr5 (23-141)||(19936691-19936809)
chr5 (142-177)||(19936843-19936878)
[»] chr2 (2 HSPs)
chr2 (177-267)||(32235006-32235096)
chr2 (177-226)||(30418630-30418679)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 6 - 273
Target Start/End: Original strand, 10033308 - 10033573
Alignment:
Q  6 aatgatgtctgctatgttgtgatacgacagtgtccccgcttacattttcctgtggagttgcgacttctgcatctataatttcctcaagaacatgaacaga 105  Q
    |||||||||||||  | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10033308 aatgatgtctgct--gatgtgatacgacagtgtccccacttacattttcctgtggagttgcgacttctgcatctataatttcctcaagaacatgaacaga 10033405  T
Q  106 tgttgaaggcagtttcttttgattgataccgatgtccgctttgtccatttgcaagtctgtctgcacttcatcaatctgaagttgcctcttgacttgttgc 205  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10033406 tgttgaaggcagtttcttttgattgatactgatgtccgctttgtccaattgcaagtctgtctgcacttcatcaatctgaagttgcctcttgacttgttgc 10033505  T
Q  206 tgctgtttcttagataaaacccaaacaaaaggagcggctgcattttctttatcataagcacgaatacg 273  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  10033506 tgctgtttcttagataaaaccggaacaaaaggagcggctgcattttctttatcataagcacgaatacg 10033573  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 10034274 - 10034356
Alignment:
Q  272 cgtactttcttacacacgaggcacattttctgatactctaagcctttttcaaaccacccttattgttatgttaacctttgcta 354  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10034274 cgtactttcttacacacgaggcacattttctggtactctaagcctttttcaaaccacccttattgttatgttaacctttgcta 10034356  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 10020609 - 10020689
Alignment:
Q  272 cgtactttcttacacacgaggcacattttctgatactctaagcctttttcaaaccacccttattgttatgttaacctttgcta 354  Q
    |||||||||||||||||||||||||||| ||| |||||||||  | |||||| |||||||||||||||||||| |||||||||    
T  10020609 cgtactttcttacacacgaggcacatttgctggtactctaag--tctttcaagccacccttattgttatgttatcctttgcta 10020689  T

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Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 41067875 - 41067757
Alignment:
Q  23 tgtgatacgacagtgtccccgcttacattttcctgtggagttgcgacttctgcatctataatttcctcaagaacatgaacagatgttgaaggcagtttct 122  Q
    ||||| ||| || |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  41067875 tgtgaaacggcattgtcaccacttacattttcctgtggagttgcgacttctgcatctataatttcctcaagaacatgaacagatgttgaaggcagcatct 41067776  T
Q  123 tttgattgataccgatgtc 141  Q
    |||||||||||||||||||    
T  41067775 tttgattgataccgatgtc 41067757  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 177
Target Start/End: Complemental strand, 41067729 - 41067694
Alignment:
Q  142 cgctttgtccatttgcaagtctgtctgcacttcatc 177  Q
    |||||||||||| |||||||||||||||||||||||    
T  41067729 cgctttgtccatctgcaagtctgtctgcacttcatc 41067694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 8656683 - 8656773
Alignment:
Q  177 caatctgaagttgcctcttgacttgttgctgctgtttcttagataaaacccaaacaaaaggagcggctgcattttctttatcataagcacg 267  Q
    |||| ||||||||  ||||||||||||||| ||||||||| ||||||||   || |||  |   ||||||||||||||||||||| |||||    
T  8656683 caatttgaagttgtttcttgacttgttgcttctgtttctttgataaaactggaataaattggctggctgcattttctttatcataggcacg 8656773  T

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Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 8479509 - 8479391
Alignment:
Q  23 tgtgatacgacagtgtccccgcttacattttcctgtggagttgcgacttctgcatctataatttcctcaagaacatgaacagatgttgaaggcagtttct 122  Q
    ||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||| ||||  |||    
T  8479509 tgtgatacggcagtgtcaccacttacattttcctgtggagttgcgacttctgcatctacaatttcctcaataatatgaacagatgttgaaagcagcatct 8479410  T
Q  123 tttgattgataccgatgtc 141  Q
    |||||||||||||||||||    
T  8479409 tttgattgataccgatgtc 8479391  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 273
Target Start/End: Complemental strand, 2899380 - 2899284
Alignment:
Q  177 caatctgaagttgcctcttgacttgttgctgctgtttcttagataaaacccaaacaaaaggagcggctgcattttctttatcataagcacgaatacg 273  Q
    |||| ||||||||  ||||||| ||||||| ||||||||| ||||||||| ||| |||  |   ||||||||||||||||||||| ||||| |||||    
T  2899380 caatttgaagttgtttcttgacatgttgcttctgtttctttgataaaaccgaaataaattggttggctgcattttctttatcataggcacggatacg 2899284  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 177
Target Start/End: Complemental strand, 8479356 - 8479322
Alignment:
Q  143 gctttgtccatttgcaagtctgtctgcacttcatc 177  Q
    ||||||||||| |||||||||||||||||||||||    
T  8479356 gctttgtccatctgcaagtctgtctgcacttcatc 8479322  T

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Target: chr5 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 19936691 - 19936809
Alignment:
Q  23 tgtgatacgacagtgtccccgcttacattttcctgtggagttgcgacttctgcatctataatttcctcaagaacatgaacagatgttgaaggcagtttct 122  Q
    ||||||||| || |||| |||||||||||||| |||||||||||||||||||| |||| | |||||||||||||||||||||||||||| |||||  |||    
T  19936691 tgtgatacggcattgtcaccgcttacattttcttgtggagttgcgacttctgcgtctacagtttcctcaagaacatgaacagatgttgagggcagcatct 19936790  T
Q  123 tttgattgataccgatgtc 141  Q
    |||||||||||||||||||    
T  19936791 tttgattgataccgatgtc 19936809  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 177
Target Start/End: Original strand, 19936843 - 19936878
Alignment:
Q  142 cgctttgtccatttgcaagtctgtctgcacttcatc 177  Q
    |||||||||||| |||||||||||||||||||||||    
T  19936843 cgctttgtccatctgcaagtctgtctgcacttcatc 19936878  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 32235006 - 32235096
Alignment:
Q  177 caatctgaagttgcctcttgacttgttgctgctgtttcttagataaaacccaaacaaaaggagcggctgcattttctttatcataagcacg 267  Q
    |||| ||||||||  ||||||||||||||| ||||||||| |||||||||  || |||  |   ||||||||||||||||||||| |||||    
T  32235006 caatttgaagttgtttcttgacttgttgcttctgtttctttgataaaaccagaataaattggctggctgcattttctttatcataggcacg 32235096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 30418679 - 30418630
Alignment:
Q  177 caatctgaagttgcctcttgacttgttgctgctgtttcttagataaaacc 226  Q
    |||| ||||||||  ||||||||||||||| ||||||||| |||||||||    
T  30418679 caatttgaagttgtttcttgacttgttgcttctgtttctttgataaaacc 30418630  T

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