View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6404_low_1 (Length: 606)
Name: NF6404_low_1
Description: NF6404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6404_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 521; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 18 - 594
Target Start/End: Complemental strand, 6917044 - 6916470
Alignment:
| Q |
18 |
ataattcagaatgaatcaatgaactccaaattgttgaaaggacttggatatggccgcccttttggccagaccggaacaatatacaagaagcctgccatga |
117 |
Q |
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| T |
6917044 |
ataattcagaatgaatcaatgaactccaaattgttgaaaggacttggatatggtcgcccttttggccagaccggaacaatatacaagaagcctgccatga |
6916945 |
T |
|
| Q |
118 |
ttatcacctcatcacagatttacagtcggaagtgcattgataagtgaacaaaaatctaaactagctgaacaatgtatgatagaattgaaaatgagcatgt |
217 |
Q |
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| T |
6916944 |
ttatcacctcatcaca--tttacagtcagaagtgcattgataagtgaacaaaaatctaaactagctgaacaatgtatgatagaattgaaaatgagcatgt |
6916847 |
T |
|
| Q |
218 |
atgtgtcaactaaaatataagaaaacgcaaatatatgataaatttaatattaaatcaagtttcccaataaaaacattggagtgacaccaaattgtacact |
317 |
Q |
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| T |
6916846 |
atgtgtcaactaaaatataagaaaacgcaaatatatgataaatttaatgttaaatcaagtttcccaataaaaacattggagtgacaccaaattgtacact |
6916747 |
T |
|
| Q |
318 |
atcacaattatagctactttttatttgctttcaaaattttgttgacccnnnnnnntgaaccaaaactacaattcttttttctagataactacccccaata |
417 |
Q |
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| T |
6916746 |
atcacaattatagctactttttatttgctttcaaaattttgttgacccaaaaaaatgaaccaaaaccacaattcttttttccagataactacccccaaaa |
6916647 |
T |
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| Q |
418 |
aatttaggaccgtgtacttgaaaggccatatcattcagctgccttattgcccttgtatgtgtttatcaatcgggtctgtacatcatgagaaacacgtgaa |
517 |
Q |
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| T |
6916646 |
aatttaggaccgtgtacttgaaaggccatatcattcagctgccttattgcccttgtatgtgtttatcaatcgggtctgtacatcatgagaaacacgtgaa |
6916547 |
T |
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| Q |
518 |
tgttccttatattccattgtgaattcaccctttccctgtgtcatcgaacgaatagccgtagaatacccaaacatatt |
594 |
Q |
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| T |
6916546 |
tgttccttatattccattgtgaattcaccctttccctgtgtcatcgaacgaatagccgtagaatacccaaacatatt |
6916470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 6890724 - 6890644
Alignment:
| Q |
98 |
atacaagaagcctgccatgattatcacctcatcacagatttacagtcggaagtgcattgataagtgaacaaaaatctaaactagctgaa |
186 |
Q |
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| T |
6890724 |
atacaagaagcctgccatgaatatcacctcat--------tacagtcagaagtacattgacaagtgaaccaaaatctaaactagctgaa |
6890644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 447 - 555
Target Start/End: Original strand, 15035941 - 15036049
Alignment:
| Q |
447 |
atcattcagctgccttattgcccttgtatgtgtttatcaatcgggtctgtacatcatgagaaacacgtgaatgttccttatattccattgtgaattcacc |
546 |
Q |
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||||||||| |||||||||||||||||||| ||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
15035941 |
atcattcaggtgccttattgcccttgtatgcgtttaccaattgggtctgtacatcatgagaaacaggtgaatgttccttatattccattgtaaattcacc |
15036040 |
T |
|
| Q |
547 |
ctttccctg |
555 |
Q |
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||||||||| |
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| T |
15036041 |
ctttccctg |
15036049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 552 - 594
Target Start/End: Original strand, 15036138 - 15036180
Alignment:
| Q |
552 |
cctgtgtcatcgaacgaatagccgtagaatacccaaacatatt |
594 |
Q |
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| T |
15036138 |
cctgtgtcatcgaacgaagagctgtagagtacccaaacatatt |
15036180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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