View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6404_low_2 (Length: 575)

Name: NF6404_low_2
Description: NF6404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6404_low_2
NF6404_low_2
[»] chr2 (7 HSPs)
chr2 (115-552)||(32498700-32499143)
chr2 (1-117)||(32499552-32499668)
chr2 (233-324)||(38821366-38821457)
chr2 (286-324)||(24766152-24766190)
chr2 (295-328)||(15678169-15678202)
chr2 (8-48)||(32499681-32499721)
chr2 (273-325)||(35334519-35334571)
[»] chr5 (1 HSPs)
chr5 (248-328)||(40829410-40829490)
[»] chr1 (5 HSPs)
chr1 (277-328)||(49020428-49020479)
chr1 (287-328)||(47059913-47059954)
chr1 (286-326)||(9445106-9445146)
chr1 (240-328)||(16263421-16263509)
chr1 (240-324)||(33076119-33076203)
[»] chr6 (3 HSPs)
chr6 (285-327)||(16743298-16743340)
chr6 (165-207)||(33210228-33210270)
chr6 (286-334)||(31204843-31204891)
[»] chr4 (2 HSPs)
chr4 (286-324)||(20632681-20632719)
chr4 (284-324)||(52697483-52697523)
[»] chr3 (2 HSPs)
chr3 (286-328)||(52100257-52100299)
chr3 (247-324)||(33976388-33976465)
[»] chr8 (2 HSPs)
chr8 (285-325)||(14548855-14548895)
chr8 (286-326)||(23754740-23754780)


Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-172; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 115 - 552
Target Start/End: Complemental strand, 32499143 - 32498700
Alignment:
Q  115 atattgttttgacatcaaaggtacatatatttgcatagatgatgtatatcttatttcaactatcattttt-aaaacaatttattagacaactaagtgcat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  32499143 atattgttttgacatcaaaggtacatatatttgcatagatgatgtatatcttatttcaactatcattttttaaaacaatttattagacaactaaatgcat 32499044  T
Q  214 gtgaataaatata-----atc--aatgcaatacagagaagataaaaacacaatgagagtattataaaaagaattgtcttaaaagttattaaaaaatggtt 306  Q
    |||||||||||||     ||   || | ||| ||  | | ||| ||||| ||||||||||||||| |||||||||||||||||||||||| |||||| ||    
T  32499043 gtgaataaatataggtatattggaacgaaat-caatgca-atataaacataatgagagtattatagaaagaattgtcttaaaagttattagaaaatgatt 32498946  T
Q  307 gtatgaatatcatttctcatttacatatgtcatatgtattattgagtaatgatatttgaataatcaataatcaaaagttgataacttttgaaacaacctt 406  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  32498945 gtataaatatcatttctcatttgcatatgtcatatgtattattgagtaatgatatttgaataatcaataatcaaaagttgacaacttttggaacaacctt 32498846  T
Q  407 cttttttggaaccatctggaaactctgatacaaactctgggtttatcatcctgcctatgattttgtatcactctgatacaaactgaacccctatttgtat 506  Q
     ||||||||||||||  ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32498845 tttttttggaaccattcggaaactttgatacaaactctgggtttatcatcctacctatgattttgtatcactctgatacaaactgaacccctatttgtat 32498746  T
Q  507 ccttccaagtagtggcactttgtaaaattcaggagtagtcatacac 552  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  32498745 ccttccaagtagtggcactttgtaaaattcaggagtagtcatacac 32498700  T

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Target: chr2; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 32499668 - 32499552
Alignment:
Q  1 agaaaaggtactacatatgtaatattttataaatttcagcgcatcaaatctgattctctatacgcgatcattattataatcgtcatattgttttgacatc 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  32499668 agaaaaggtactacatatgtaatattttataaatttcagcacatcaaatctgattctctataggcgatcattattataatcgccatattgttttgacatc 32499569  T
Q  101 aaaagtgtatataaata 117  Q
    |||||||||||||||||    
T  32499568 aaaagtgtatataaata 32499552  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 324
Target Start/End: Complemental strand, 38821457 - 38821366
Alignment:
Q  233 gcaatacagagaagataaaaacacaatgagagtattataaaaagaattgtcttaaaagttattaaaaaatggttgtatgaatatcatttctc 324  Q
    |||||| ||||||| ||||||||||||| |||||| | ||| | |||||||  ||||||| | | |||||||||||   |||||||||||||    
T  38821457 gcaatagagagaaggtaaaaacacaatgtgagtatgagaaagaaaattgtcacaaaagttgtcataaaatggttgttcaaatatcatttctc 38821366  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 324
Target Start/End: Complemental strand, 24766190 - 24766152
Alignment:
Q  286 aaaagttattaaaaaatggttgtatgaatatcatttctc 324  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  24766190 aaaagttattaaaaaatggttgtacaaatatcatttctc 24766152  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 328
Target Start/End: Complemental strand, 15678202 - 15678169
Alignment:
Q  295 taaaaaatggttgtatgaatatcatttctcattt 328  Q
    |||||||||||||||| |||||||||||||||||    
T  15678202 taaaaaatggttgtataaatatcatttctcattt 15678169  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 32499721 - 32499681
Alignment:
Q  8 gtactacatatgtaatattttataaatttcagcgcatcaaa 48  Q
    |||||| | |||||||||||||||||||||||| |||||||    
T  32499721 gtactatacatgtaatattttataaatttcagcacatcaaa 32499681  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 35334571 - 35334519
Alignment:
Q  273 aaagaattgtcttaaaagttattaaaaaatggttgtatgaatatcatttctca 325  Q
    ||||||||||   ||||||||||| ||||||||||||  ||||||||||||||    
T  35334571 aaagaattgttacaaaagttattataaaatggttgtacaaatatcatttctca 35334519  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 328
Target Start/End: Complemental strand, 40829490 - 40829410
Alignment:
Q  248 taaaaacacaatgagagtattataaaaagaattgtcttaaaagttattaaaaaatggttgtatgaatatcatttctcattt 328  Q
    |||||| | |||| |||||| | | ||| |||||||  |||| |||||||||||||||||||  |||||||||||||||||    
T  40829490 taaaaatataatgtgagtatgagagaaaaaattgtcacaaaaattattaaaaaatggttgtacaaatatcatttctcattt 40829410  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 328
Target Start/End: Original strand, 49020428 - 49020479
Alignment:
Q  277 aattgtcttaaaagttattaaaaaatggttgtatgaatatcatttctcattt 328  Q
    |||||||  ||||||| ||||||||||||||||  |||||||||||||||||    
T  49020428 aattgtcacaaaagttgttaaaaaatggttgtacaaatatcatttctcattt 49020479  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 328
Target Start/End: Original strand, 47059913 - 47059954
Alignment:
Q  287 aaagttattaaaaaatggttgtatgaatatcatttctcattt 328  Q
    |||||| ||||||||||||||||  |||||||||||||||||    
T  47059913 aaagttgttaaaaaatggttgtacaaatatcatttctcattt 47059954  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 326
Target Start/End: Complemental strand, 9445146 - 9445106
Alignment:
Q  286 aaaagttattaaaaaatggttgtatgaatatcatttctcat 326  Q
    ||||||| ||| |||||||||||| ||||||||||||||||    
T  9445146 aaaagttgttacaaaatggttgtacgaatatcatttctcat 9445106  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 328
Target Start/End: Complemental strand, 16263509 - 16263421
Alignment:
Q  240 agagaagataaaaacacaatgagagtattataaaaagaattgtcttaaaagttattaaaaaatggttgtatgaatatcatttctcattt 328  Q
    |||||| ||||||| | |||| || ||| | ||||| ||||||| |||||||| ||| |||||  |||||  |||||||||||||||||    
T  16263509 agagaaaataaaaatataatgtgaatatgagaaaaaaaattgtcataaaagttgttagaaaataattgtacaaatatcatttctcattt 16263421  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 324
Target Start/End: Complemental strand, 33076203 - 33076119
Alignment:
Q  240 agagaagataaaaacacaatgagagtattataaaaagaattgtcttaaaagttattaaaaaatggttgtatgaatatcatttctc 324  Q
    |||||| ||||||| | |||| |||||| ||| | | | ||||| |||||||| ||| ||||||||||||  |||||||||||||    
T  33076203 agagaaaataaaaatataatgtgagtatgatagagaaagttgtcataaaagttgttagaaaatggttgtacaaatatcatttctc 33076119  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 285 - 327
Target Start/End: Original strand, 16743298 - 16743340
Alignment:
Q  285 taaaagttattaaaaaatggttgtatgaatatcatttctcatt 327  Q
    ||||| |||||||||||||||||||  ||||||||||||||||    
T  16743298 taaaaattattaaaaaatggttgtacaaatatcatttctcatt 16743340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 33210270 - 33210228
Alignment:
Q  165 ttatttcaactatcatttttaaaacaatttattagacaactaa 207  Q
    |||||||||| | ||||||||||||||||||| ||||||||||    
T  33210270 ttatttcaacaaccatttttaaaacaatttataagacaactaa 33210228  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 31204843 - 31204891
Alignment:
Q  286 aaaagttattaaaaaatggttgtatgaatatcatttctcatttacatat 334  Q
    ||||||||| ||||||||||||||  ||||||||||||| |||| ||||    
T  31204843 aaaagttatcaaaaaatggttgtagaaatatcatttctcttttaaatat 31204891  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 324
Target Start/End: Original strand, 20632681 - 20632719
Alignment:
Q  286 aaaagttattaaaaaatggttgtatgaatatcatttctc 324  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  20632681 aaaagttatcaaaaaatggttgtataaatatcatttctc 20632719  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 52697523 - 52697483
Alignment:
Q  284 ttaaaagttattaaaaaatggttgtatgaatatcatttctc 324  Q
    |||||| ||||||||||||| |||||| |||||||||||||    
T  52697523 ttaaaaattattaaaaaatgattgtataaatatcatttctc 52697483  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 328
Target Start/End: Complemental strand, 52100299 - 52100257
Alignment:
Q  286 aaaagttattaaaaaatggttgtatgaatatcatttctcattt 328  Q
    |||| |||||||||||||||||||  |||||||||||||||||    
T  52100299 aaaaattattaaaaaatggttgtacaaatatcatttctcattt 52100257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 324
Target Start/End: Original strand, 33976388 - 33976465
Alignment:
Q  247 ataaaaacacaatgagagtattataaaaagaattgtcttaaaagttattaaaaaatggttgtatgaatatcatttctc 324  Q
    ||||||| ||||||||||||| | ||| || |||||| |||||||| ||| ||||||| |||   |||||||||||||    
T  33976388 ataaaaaaacaatgagagtatgaaaaagaggattgtcataaaagttgttacaaaatggatgttcaaatatcatttctc 33976465  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 14548855 - 14548895
Alignment:
Q  285 taaaagttattaaaaaatggttgtatgaatatcatttctca 325  Q
    ||||| |||||||||||||||||||  ||||||||||||||    
T  14548855 taaaaattattaaaaaatggttgtacaaatatcatttctca 14548895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 326
Target Start/End: Original strand, 23754740 - 23754780
Alignment:
Q  286 aaaagttattaaaaaatggttgtatgaatatcatttctcat 326  Q
    |||||||||||||||||||||||   |||||||||||||||    
T  23754740 aaaagttattaaaaaatggttgttcaaatatcatttctcat 23754780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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