View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6404_low_3 (Length: 474)
Name: NF6404_low_3
Description: NF6404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6404_low_3 |
 | |
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| [»] scaffold0911 (1 HSPs) |
| | |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 19 - 466
Target Start/End: Original strand, 10032868 - 10033316
Alignment:
| Q |
19 |
caagcaatagaaatcatcaccacttcatcttgttgaattgcatctaccccaaccttcaagccgttaacagatgatagtactgacattgctatac-gcgga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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|
| T |
10032868 |
caagcaatagaaatcatcaccacttcatcttgttgaattgcatctaccccaaccttcaagccgttaacaaatgatagtactgacattgctataccgcgga |
10032967 |
T |
|
| Q |
118 |
tgttccaataaaggaaattcattgagaagggggagttgaacccttcgcacgggtgttttacgaagctttccctaaaacatgctttttcaatgtttgctgc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10032968 |
tgttccaataaaggaaattcattgagaagggggagttgaacccttcgcacgggtgttgtacgaagctttccctaaaacatgctttttcaatgtttgctgc |
10033067 |
T |
|
| Q |
218 |
tgttttttagataaaacttacgtgaatccttcgcttgccatacgttgatcatactcccgaatgcgagcccataaatccaagtcattttgcacatttttca |
317 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
10033068 |
tgttttttagataaaacttgcgtgaatccttcgcttgccatacgttgatcatactcccgaatgtgagcccataaatccaagtcattttgcacatttttca |
10033167 |
T |
|
| Q |
318 |
aaacctggatttccctggactgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgttcttgaattcgcttatgtctctgttggtct |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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|
| T |
10033168 |
aaacctggatttccctggactgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgttcttgaattcgcttatgtttctgttgatct |
10033267 |
T |
|
| Q |
418 |
ggattgcacatttgttgaatgttccaatgccataacacctgatgatgtc |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
10033268 |
ggattgcacatttgttgaatgttccaatgccataacatctaatgatgtc |
10033316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 270; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 115 - 464
Target Start/End: Complemental strand, 41068233 - 41067884
Alignment:
| Q |
115 |
ggatgttccaataaaggaaattcattgagaagggggagttgaacccttcgcacgggtgttttacgaagctttccctaaaacatgctttttcaatgtttgc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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|
| T |
41068233 |
ggatgttccaataaaggaaattcattgagaagggggagttgaacccttcgcacgggtgttgtacgaagctttccctaaaacttgctttttcaatgtttgc |
41068134 |
T |
|
| Q |
215 |
tgctgttttttagataaaacttacgtgaatccttcgcttgccatacgttgatcatactcccgaatgcgagcccataaatccaagtcattttgcacatttt |
314 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
41068133 |
tgctgttttttagacaaaacttgcgtgaatccttcggctgccatacgttgatcttactcccgaatgcgagcccataaatccaagtcattttgaacatttt |
41068034 |
T |
|
| Q |
315 |
tcaaaacctggatttccctggactgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgttcttgaattcgcttatgtctctgttgg |
414 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||||||| ||| |
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|
| T |
41068033 |
tcgaaacctggatttccttggactgaattgaaacttcacgcacctgatcagcagtaaactcattagctgctgcacttgaattagcttctgtctctgctgg |
41067934 |
T |
|
| Q |
415 |
tctggattgcacatttgttgaatgttccaatgccataacacctgatgatg |
464 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||| || |||||| |
|
|
| T |
41067933 |
tctggattgcacattagctgaatgttccaatgccataacatctaatgatg |
41067884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 131 - 464
Target Start/End: Complemental strand, 8479851 - 8479518
Alignment:
| Q |
131 |
gaaattcattgagaagggggagttgaacccttcgcacgggtgttttacgaagctttccctaaaacatgctttttcaatgtttgctgctgttttttagata |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||| | |
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|
| T |
8479851 |
gaaattcattgagaagggggagttgaacccttcacacgggtgttgtacgaagttttccctaaaacttgctttttcaatgtttgctgctgttttttagaca |
8479752 |
T |
|
| Q |
231 |
aaacttacgtgaatccttcgcttgccatacgttgatcatactcccgaatgcgagcccataaatccaagtcattttgcacatttttcaaaacctggatttc |
330 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
8479751 |
aaacttgcgtgaatccttcggctgccatacgttgatcatactcccgaatgcgagcctataaatccaagtcattttgaacatttttcgaaacctggatttc |
8479652 |
T |
|
| Q |
331 |
cctggactgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgttcttgaattcgcttatgtctctgttggtctggattgcacattt |
430 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
8479651 |
cttggactgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgcacttgaattcgcttctgtctctgctggtctggattgcacattt |
8479552 |
T |
|
| Q |
431 |
gttgaatgttccaatgccataacacctgatgatg |
464 |
Q |
| |
|
| |||||||||||||||||||||| || |||||| |
|
|
| T |
8479551 |
gctgaatgttccaatgccataacatctaatgatg |
8479518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 331
Target Start/End: Complemental strand, 10996984 - 10996811
Alignment:
| Q |
157 |
acccttcgcacgggtgttttacgaagctttccctaaaacatgctttttcaatgtttgctgctgttttttagataaaacttacgtgaatccttcgcttgcc |
256 |
Q |
| |
|
|||||| ||||||||||| ||||| ||||| ||||| || | |||||||| || ||||||||||| || |||| ||||| ||| || ||||| ||| |
|
|
| T |
10996984 |
accctttgcacgggtgttatacgaggcttttcctaacactttctttttcactgcctgctgctgtttcttggatagaacttgcgtaaaatcttcgtccgcc |
10996885 |
T |
|
| Q |
257 |
atacgttgatcatactcccgaatgcgagcccataaatccaagtcattttgcacatttttcaaaacctggatttcc |
331 |
Q |
| |
|
|| | ||||||||| || ||||| || ||||| |||||||||| |||| | ||||||| ||||||| |||||| |
|
|
| T |
10996884 |
atccattgatcatattcacgaattcggacccat-aatccaagtccctttggaaatttttcgaaacctgaatttcc |
10996811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 131 - 464
Target Start/End: Original strand, 19936349 - 19936682
Alignment:
| Q |
131 |
gaaattcattgagaagggggagttgaacccttcgcacgggtgttttacgaagctttccctaaaacatgctttttcaatgtttgctgctgttttttagata |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
19936349 |
gaaattcattgagaagggggagttgaacccttcgcacgggtgttgtacgaagctttccctaaaacttgctttttcaatgtttgctgctgttttttagaca |
19936448 |
T |
|
| Q |
231 |
aaacttacgtgaatccttcgcttgccatacgttgatcatactcccgaatgcgagcccataaatccaagtcattttgcacatttttcaaaacctggatttc |
330 |
Q |
| |
|
|||| | ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
19936449 |
aaacctgcgtgaatccttcggcggccatacattgatcatactcccgaatgcgagcccataaatccaagtcattttgaacatttttcgaaacctggatttc |
19936548 |
T |
|
| Q |
331 |
cctggactgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgttcttgaattcgcttatgtctctgttggtctggattgcacattt |
430 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| ||||||||||||||||||| |
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|
| T |
19936549 |
cttggattgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgcacttgaattcgcttttgcctctgctggtctggattgcacattt |
19936648 |
T |
|
| Q |
431 |
gttgaatgttccaatgccataacacctgatgatg |
464 |
Q |
| |
|
| ||| |||||||||||||||||| || |||||| |
|
|
| T |
19936649 |
gctgactgttccaatgccataacagctaatgatg |
19936682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 29924295 - 29924242
Alignment:
| Q |
47 |
cttgttgaattgcatctaccccaaccttcaagccgttaacagatgatagtactg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29924295 |
cttgttgaattgcatctaccccaaccttcaagccattaacagatgatagtactg |
29924242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0911 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0911
Description:
Target: scaffold0911; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 116 - 315
Target Start/End: Original strand, 2738 - 2934
Alignment:
| Q |
116 |
gatgttccaataaaggaaattcattgagaagggggagttgaacccttcgcacgggtgttttacgaagctttccctaaaacatgctttttcaatgtttgct |
215 |
Q |
| |
|
||||||||||||||||| | |||||||| ||| ||||| |||||| |||||||| || ||||||||||| || | ||| ||||||||||||||||| | |
|
|
| T |
2738 |
gatgttccaataaaggacactcattgaggaggaggagt---accctttgcacgggttttatacgaagctttacccagaacttgctttttcaatgtttgtt |
2834 |
T |
|
| Q |
216 |
gctgttttttagataaaacttacgtgaatccttcgcttgccatacgttgatcatactcccgaatgcgagcccataaatccaagtcattttgcacattttt |
315 |
Q |
| |
|
|||| || || ||||| |||| |||||| ||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2835 |
gctgcttcttggataacacttgcgtgaagccttctgttgccatccgttgatcatactcgcgaatgcgagcccataaatccaagtcattttgtacattttt |
2934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 15952755 - 15952823
Alignment:
| Q |
19 |
caagcaatagaaatcatcaccacttcatcttgttgaattgcatctaccccaaccttcaagccgttaaca |
87 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15952755 |
caagcaacagaaatcatcaccacttcatcttgtcgaattgcatctaccccaaccttcaagccgttaaca |
15952823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 115 - 243
Target Start/End: Complemental strand, 352 - 224
Alignment:
| Q |
115 |
ggatgttccaataaaggaaattcattgagaagggggagttgaacccttcgcacgggtgttttacgaagctttccctaaaacatgctttttcaatgtttgc |
214 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||| |||||| ||||||||||| ||||||||||| || | ||| ||||||||||||||||| |
|
|
| T |
352 |
ggatgttccaataaaggacattcattgagaatgatgaggattaccctttgcacgggtgttatacgaagctttacccataacttgctttttcaatgtttgt |
253 |
T |
|
| Q |
215 |
tgctgttttttagataaaacttacgtgaa |
243 |
Q |
| |
|
||||| || || ||||| |||| |||||| |
|
|
| T |
252 |
tgctgcttcttggataacacttgcgtgaa |
224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 120 - 321
Target Start/End: Complemental strand, 26657379 - 26657175
Alignment:
| Q |
120 |
ttccaataaaggaaattcat--tga-gaagggggagttgaacccttcgcacgggtgttttacgaagctttccctaaaacatgctttttcaatgtttgctg |
216 |
Q |
| |
|
|||||||||||||||||||| ||| |||| |||| | |||||| || |||||||| |||| ||| || ||||| || ||| |||| | || ||| || |
|
|
| T |
26657379 |
ttccaataaaggaaattcatgatgaagaagatggaggagtaccctttgcccgggtgttgtacggagcctttcctaacacttgccttttaactgcttgttg |
26657280 |
T |
|
| Q |
217 |
ctgttttttagataaaacttacgtgaatccttcgcttgccatacgttgatcatactcccgaatgcgagcccataaatccaagtcattttgcacatttttc |
316 |
Q |
| |
|
||| ||||| |||||||||| ||||| ||||| ||||| ||||||||||| || ||||| || ||| |||||||||| ||||| || ||||| ||| |
|
|
| T |
26657279 |
ctgctttttggataaaacttgtgtgaagccttcatccgccatccgttgatcatattcacgaatacgtgcctataaatccaaatcattctggacattcttc |
26657180 |
T |
|
| Q |
317 |
aaaac |
321 |
Q |
| |
|
|||| |
|
|
| T |
26657179 |
gaaac |
26657175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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