View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6404_low_4 (Length: 460)

Name: NF6404_low_4
Description: NF6404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6404_low_4
NF6404_low_4
[»] chr5 (5 HSPs)
chr5 (17-243)||(37175104-37175331)
chr5 (247-333)||(37050381-37050467)
chr5 (369-449)||(37050253-37050333)
chr5 (369-449)||(26897309-26897389)
chr5 (292-332)||(26897430-26897470)
[»] chr4 (5 HSPs)
chr4 (369-449)||(45002212-45002292)
chr4 (247-333)||(45002076-45002162)
chr4 (256-331)||(16648911-16648986)
chr4 (249-331)||(8362354-8362436)
chr4 (371-419)||(55741612-55741660)
[»] chr8 (3 HSPs)
chr8 (247-331)||(13795005-13795089)
chr8 (369-442)||(13795109-13795182)
chr8 (369-413)||(14526777-14526821)
[»] scaffold0034 (1 HSPs)
scaffold0034 (247-331)||(102674-102757)
[»] chr6 (4 HSPs)
chr6 (369-442)||(10329181-10329255)
chr6 (369-418)||(3226892-3226941)
chr6 (247-333)||(10329287-10329372)
chr6 (247-331)||(3226973-3227056)
[»] chr1 (2 HSPs)
chr1 (370-442)||(8151886-8151959)
chr1 (372-442)||(52240798-52240869)
[»] chr7 (1 HSPs)
chr7 (369-440)||(22382373-22382445)


Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 37175104 - 37175331
Alignment:
Q  17 accctgtaaccaaaattagtattgtggcacttattcctcacactgtgtggaccacaacaaaccctacattcca-tttcattaaccattaaccaataccaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37175104 accctgtaaccaaaattagtattgtggcacttattcctcacactgtgtggaccacaacaaaccctacattccaatttcattaaccattaaccaataccaa 37175203  T
Q  116 acaatttgttacctctttattagggaaacttggtacatccaaacggtcccaaattaaatcaagtatgaaaattatttgaacataatttggtttattttgg 215  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  37175204 acaatttgttacctctttattagggaaacttagtacatccaaacggtcccaaattaaatcaagtatgaaaattatttgaacataatttggtgttttttgg 37175303  T
Q  216 tttttagtaataaaaagttgattctctg 243  Q
    |||||||| ||||||||| |||||||||    
T  37175304 tttttagtgataaaaagtagattctctg 37175331  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 247 - 333
Target Start/End: Complemental strand, 37050467 - 37050381
Alignment:
Q  247 ggctggccaaagggtaaggcgacccaagccctcgctttagactcttgaattttggatttagaataaaagtctcacaatagacaaaat 333  Q
    |||||||| |||||||||| |||||||||||||||||||| | | |||||||||||||||||||||| |||||||||||||||||||    
T  37050467 ggctggcctaagggtaaggtgacccaagccctcgctttaggcccctgaattttggatttagaataaaggtctcacaatagacaaaat 37050381  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 369 - 449
Target Start/End: Complemental strand, 37050333 - 37050253
Alignment:
Q  369 cacacaacaaatgaattatacaacttggtcgtgaagcaaagatggtagacgagaactttatgatacttacaacacaggttc 449  Q
    |||||||||||||||| ||||||||||||||| |||||||||| ||||||| |||||||||||| ||| ||||| ||||||    
T  37050333 cacacaacaaatgaatcatacaacttggtcgtaaagcaaagattgtagacgtgaactttatgatgcttgcaacataggttc 37050253  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 449
Target Start/End: Complemental strand, 26897389 - 26897309
Alignment:
Q  369 cacacaacaaatgaattatacaacttggtcgtgaagcaaagatggtagacgagaactttatgatacttacaacacaggttc 449  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||  |||| |||||| ||||||| | ||||||    
T  26897389 cacacaacaaatgaattatacaacttggtcgtgaagtgaagatggtagacgcaaactatatgatgcttacaatataggttc 26897309  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 26897470 - 26897430
Alignment:
Q  292 tgaattttggatttagaataaaagtctcacaatagacaaaa 332  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  26897470 tgaattttggatttagaataaaggtctcacaatagacaaaa 26897430  T

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Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 369 - 449
Target Start/End: Original strand, 45002212 - 45002292
Alignment:
Q  369 cacacaacaaatgaattatacaacttggtcgtgaagcaaagatggtagacgagaactttatgatacttacaacacaggttc 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||    
T  45002212 cacacaacaaatgaattatacaacttggtcgtgaagcaaagatggtagacgcgaactttatgatgcttacaacataggttc 45002292  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 247 - 333
Target Start/End: Original strand, 45002076 - 45002162
Alignment:
Q  247 ggctggccaaagggtaaggcgacccaagccctcgctttagactcttgaattttggatttagaataaaagtctcacaatagacaaaat 333  Q
    |||||||| |||||||||||||||||||| |||||||| | | | ||| |||||||||||||||||| |||||||||||||||||||    
T  45002076 ggctggcctaagggtaaggcgacccaagctctcgctttcggcccctgacttttggatttagaataaaggtctcacaatagacaaaat 45002162  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 331
Target Start/End: Original strand, 16648911 - 16648986
Alignment:
Q  256 aagggtaaggcgacccaagccctcgctttagactcttgaattttggatttagaataaaagtctcacaatagacaaa 331  Q
    ||||||||||||||||||||||||||||||| | |   ||||| ||||||| |||||| | |||||||||||||||    
T  16648911 aagggtaaggcgacccaagccctcgctttaggcccccaaatttcggatttataataaaggcctcacaatagacaaa 16648986  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 249 - 331
Target Start/End: Complemental strand, 8362436 - 8362354
Alignment:
Q  249 ctggccaaagggtaaggcgacccaagccctcgctttagactcttgaattttggatttagaataaaagtctcacaatagacaaa 331  Q
    |||||| |||| |||||| ||||||||||||||||||| | |    |||||||| |||||||||| |||||||||||||||||    
T  8362436 ctggcctaaggttaaggcaacccaagccctcgctttaggcccccatattttggacttagaataaaggtctcacaatagacaaa 8362354  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 419
Target Start/End: Original strand, 55741612 - 55741660
Alignment:
Q  371 cacaacaaatgaattatacaacttggtcgtgaagcaaagatggtagacg 419  Q
    |||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  55741612 cacaacaaatgaattatacaactttgttatgaagcaaagatggtagacg 55741660  T

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Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 247 - 331
Target Start/End: Original strand, 13795005 - 13795089
Alignment:
Q  247 ggctggccaaagggtaaggcgacccaagccctcgctttagactcttgaattttggatttagaataaaagtctcacaatagacaaa 331  Q
    |||||||| ||||||||||||||||||||||||||||||| |   ||||||||||| |||||||||| | || ||||||||||||    
T  13795005 ggctggcctaagggtaaggcgacccaagccctcgctttaggcctctgaattttggacttagaataaaggcctaacaatagacaaa 13795089  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 369 - 442
Target Start/End: Original strand, 13795109 - 13795182
Alignment:
Q  369 cacacaacaaatgaattatacaacttggtcgtgaagcaaagatggtagacgaga-actttatgatacttacaaca 442  Q
    ||||||||||||||||||||||||||  || |||| ||||||||||||||| ||  |||||||||||||||||||    
T  13795109 cacacaacaaatgaattatacaactt-atcatgaaacaaagatggtagacgcgaggctttatgatacttacaaca 13795182  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 413
Target Start/End: Original strand, 14526777 - 14526821
Alignment:
Q  369 cacacaacaaatgaattatacaacttggtcgtgaagcaaagatgg 413  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||    
T  14526777 cacacaacaaatgaattatacaacttggtcatgaagcaaatatgg 14526821  T

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Target: scaffold0034 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 331
Target Start/End: Original strand, 102674 - 102757
Alignment:
Q  247 ggctggccaaagggtaaggcgacccaagccctcgctttagactcttgaattttggatttagaataaaagtctcacaatagacaaa 331  Q
    |||||||| ||||||||||| ||||||||||| ||||||| |||  |||||||||| |||||||||| | |||||||||||||||    
T  102674 ggctggcctaagggtaaggcaacccaagcccttgctttaggctc-cgaattttggacttagaataaaggcctcacaatagacaaa 102757  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 369 - 442
Target Start/End: Complemental strand, 10329255 - 10329181
Alignment:
Q  369 cacacaacaaatgaattatacaacttggtcgtgaagcaaagatggtagacgaga-actttatgatacttacaaca 442  Q
    ||||||||||||||||||||||| || ||| |||||||||||||||||| | ||  ||||||||| |||||||||    
T  10329255 cacacaacaaatgaattatacaattttgtcatgaagcaaagatggtagatgcgatgctttatgatgcttacaaca 10329181  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 3226941 - 3226892
Alignment:
Q  369 cacacaacaaatgaattatacaacttggtcgtgaagcaaagatggtagac 418  Q
    |||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  3226941 cacataacaaatgaattatacaactttgtcatgaagcaaagatggtagac 3226892  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 333
Target Start/End: Complemental strand, 10329372 - 10329287
Alignment:
Q  247 ggctggccaaagggtaaggcgacccaagccctcgctttagactcttgaattttggatttagaataaaagtctcacaatagacaaaat 333  Q
    |||||||| |||||||||| |||||||||||||||| ||| |   |||| |||||| |||||||||| | |||| ||||||||||||    
T  10329372 ggctggcctaagggtaaggtgacccaagccctcgctctaggcctctgaa-tttggacttagaataaaggcctcataatagacaaaat 10329287  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 331
Target Start/End: Complemental strand, 3227056 - 3226973
Alignment:
Q  247 ggctggccaaagggtaaggcgacccaagccctcgctttagactcttgaattttggatttagaataaaagtctcacaatagacaaa 331  Q
    |||||||| |||||||||||||| ||| |||||| ||||| | ||| || |||||| |||||||||| | || ||||||||||||    
T  3227056 ggctggcctaagggtaaggcgactcaaaccctcgttttaggc-cttcaaatttggagttagaataaaggccttacaatagacaaa 3226973  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 442
Target Start/End: Original strand, 8151886 - 8151959
Alignment:
Q  370 acacaacaaatgaattatacaacttggtcgtgaagcaaagatggtagacgag-aactttatgatacttacaaca 442  Q
    |||||| |||||||||||| ||||| ||| ||||||||||| |||||||| | ||||||||||| |||||||||    
T  8151886 acacaaaaaatgaattatataactttgtcatgaagcaaagacggtagacgcgaaactttatgatgcttacaaca 8151959  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 442
Target Start/End: Complemental strand, 52240869 - 52240798
Alignment:
Q  372 acaacaaatgaattatacaacttggtcgtgaagcaaagatggtagacgaga-actttatgatacttacaaca 442  Q
    |||| |||| |||||| ||||||  || |||||||||||||||||||| || |||||||||| |||||||||    
T  52240869 acaataaataaattatgcaactttatcatgaagcaaagatggtagacgcgagactttatgatgcttacaaca 52240798  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 440
Target Start/End: Original strand, 22382373 - 22382445
Alignment:
Q  369 cacacaacaaatgaattatacaacttggtcgtgaagcaaagatggtagacgaga-actttatgatacttacaa 440  Q
    |||| ||||||||||||||||||||| ||| |||| ||||||||||||||| ||  ||||||||| |||||||    
T  22382373 cacaaaacaaatgaattatacaactttgtcatgaaacaaagatggtagacgcgatgctttatgatgcttacaa 22382445  T

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