View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6404_low_6 (Length: 326)
Name: NF6404_low_6
Description: NF6404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6404_low_6 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 39636142 - 39636453
Alignment:
| Q |
1 |
tcccttgatcttccattttgtacaaagttccttgatcaccacttgtgctacactaaataaaatttcaaaacagaaaagtgatgaattattaattgctaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39636142 |
tcccttgatcttccattttgtacaaagttccttgatcaccacttgtgctacactaaataaaatttcaaaacagaaaagtgatgaattattaattgctaag |
39636241 |
T |
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| Q |
101 |
tatctatcaatatataaatttcagctcagaatgttaatgtggcagtagaaaaacatacctaaatgagattgataatttcttttcttgatcttctcaagat |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39636242 |
tatctatcaatatataaatttcagctcagaatattaatgtggcagtagaaaaacatacctaaatgagattgataatttcttttcttgatcttctcaagat |
39636341 |
T |
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| Q |
201 |
tctgagacaaaaagatggaaatatagatgaataaaacaatgtatacttcaagaaaaatatatggttgctatatttcaagatgatgttgcagttgcacttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39636342 |
tctgagacaaaaagatggaaatatagatgaataaaacaatgtatacttcaagaaaaatatatggttgctatatttcaagatgatgttgcagttgcacttg |
39636441 |
T |
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| Q |
301 |
ccttgtcaataa |
312 |
Q |
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|||||||||||| |
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| T |
39636442 |
ccttgtcaataa |
39636453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 155 - 268
Target Start/End: Original strand, 23348866 - 23348979
Alignment:
| Q |
155 |
atacctaaatgagattgataatttcttttcttgatcttctcaagattctgagacaaaaagatggaaatatagatgaataaaacaatgtatacttcaagaa |
254 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| | | |||||||| |
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| T |
23348866 |
atacctaaatgagattgagaatttcttttcttgatcttctccagagtctgagacaaaaagatggaaatatagatgaataaaacaatgaaaatttcaagaa |
23348965 |
T |
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| Q |
255 |
aaatatatggttgc |
268 |
Q |
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| T |
23348966 |
aaagatatgtttgc |
23348979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 23348734 - 23348867
Alignment:
| Q |
1 |
tcccttgatcttccattttgtacaaagttccttgatcaccacttgtgctacactaaataaaatttcaaaacagaaaagtgatgaattattaattgctaag |
100 |
Q |
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||||||||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||||||||||||||| | || ||||| ||||||||||| |
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| T |
23348734 |
tcccttgatcttccattttgtgcaaagttccttaataaccacttgtgctacac--aataaaatttcaaaacagaaaaatcataaattaataattgctaag |
23348831 |
T |
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| Q |
101 |
----tatctatcaatatataaatttcagctcagaat |
132 |
Q |
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|||||||| |||||| |||||||| ||||||| |
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| T |
23348832 |
tatatatctatctatatatgaatttcagttcagaat |
23348867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 160115 - 160049
Alignment:
| Q |
1 |
tcccttgatcttccattttgtacaaagttccttgatcaccacttgtgctacactaaataaaatttcaaa |
69 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
160115 |
tcccttgatcttccattttgtgcaaagttccttaatcaccacttgtgctacac--aataaaatttcaaa |
160049 |
T |
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