View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6404_low_8 (Length: 238)
Name: NF6404_low_8
Description: NF6404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6404_low_8 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 2949346 - 2949573
Alignment:
| Q |
11 |
acataatcaagtatccctttattccacttatcatccaagagaattgtctcccttgacgaggcaagaacaaaatctgcctgaattatgaatggaaaattag |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2949346 |
acatattcaagtatccctttattccacttatcatccaagagaattgtctcccttgacgaggcaagaacaaaatctgcctgaattatgaatggaaaattag |
2949445 |
T |
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| Q |
111 |
tgaccatctctgtaggaagaaatgcgaaaacccctggtaagctcttatccttgtgaagcctctcctggagagggaaggccactgtcacaacacactcttc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
2949446 |
tgaccatctctgtaggaagaaatgcgaaaacccctggtaagctcttatccttgtgaagcctctcctggtgagggaaggccaatgtcacaacacactcttc |
2949545 |
T |
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| Q |
211 |
cacacacattctcctttccacaacgttc |
238 |
Q |
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||||| |||||||||||||||||||||| |
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| T |
2949546 |
cacacccattctcctttccacaacgttc |
2949573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 3010062 - 3009842
Alignment:
| Q |
11 |
acataatcaagtatccctttattccacttatcatccaagagaattgtctcccttgacgaggcaagaacaaaatctgcctgaattatgaatggaaaattag |
110 |
Q |
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||||| ||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3010062 |
acatattcaagaatcccttgattccacttatcatcaaagagaattgtctcccttgacgaggcaagaacaaaatctgcttgaattatgaatggaaaattag |
3009963 |
T |
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| Q |
111 |
tgaccatctctgtaggaagaaatgcgaaaacccctggtaagctcttatccttgtgaagcctctcctggagagggaaggccactgtcacaacacactcttc |
210 |
Q |
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| T |
3009962 |
tgaccatctctgtaggaagaaatgcataaacccctggtaagctcttatccttgtctagcctctcctgttgtgggaaggccaatgtcacaacacactcttc |
3009863 |
T |
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| Q |
211 |
cacacacattctcctttccac |
231 |
Q |
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||||| | ||||||||||||| |
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| T |
3009862 |
cacaccccttctcctttccac |
3009842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 169
Target Start/End: Original strand, 2932693 - 2932851
Alignment:
| Q |
11 |
acataatcaagtatccctttattccacttatcatccaagagaattgtctcccttgacgaggcaagaacaaaatctgcctgaattatgaatggaaaattag |
110 |
Q |
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||||| ||||||||||||| |||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| |||| |
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| T |
2932693 |
acatattcaagtatcccttgattccacttatcattcaatagaattgtttcccttgacgaggcaagaacaaaatctgcttgaattatgaagggaaagttag |
2932792 |
T |
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| Q |
111 |
tgaccatctctgtaggaagaaatgcgaaaacccctggtaagctcttatccttgtgaagc |
169 |
Q |
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| T |
2932793 |
taaccatctctgtaggaagaaatgcataaacccctggagagctctgatgcttgcgaagc |
2932851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 37798206 - 37798399
Alignment:
| Q |
17 |
tcaagtatccctttattccacttatcatccaagagaattgtctcccttgacgaggcaagaacaaaatctgcctgaattatgaatggaaaattagtgacca |
116 |
Q |
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||||||||||||| ||||| |||| ||||||||||||||||||||| || |||||||| ||||||||||| ||||| ||||| || ||||||||||||| |
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| T |
37798206 |
tcaagtatcccttggttccatttattatccaagagaattgtctccctagatgaggcaaggacaaaatctgcttgaataatgaaagggaaattagtgacca |
37798305 |
T |
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| Q |
117 |
tctctgtaggaagaaatgcgaaaacccctggtaagctcttatccttgtgaagcctctcctggagagggaaggccactgtcacaacacactcttc |
210 |
Q |
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||||||||||||||||||| | ||||||||| |||| ||| || | |||||||||||||| |||||||||| ||||||||| || ||||| |
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| T |
37798306 |
tctctgtaggaagaaatgcatagacccctggtgagcttttacccctatgaagcctctcctgatttgggaaggccagtgtcacaacccattcttc |
37798399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 2923352 - 2923549
Alignment:
| Q |
17 |
tcaagtatccctttattccacttatcatccaagagaattgtctcccttgacgaggcaagaacaaaatctgcctgaattatgaatggaaaattagtgacca |
116 |
Q |
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|||||||| |||| ||||| |||| |||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||| |
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| T |
2923352 |
tcaagtattccttggttccatttattatccaagagaattgtctcccttgatgaggcaaggacaaaatctgcttgaataatgaaaggaaaattagtgacca |
2923451 |
T |
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| Q |
117 |
tctctgtaggaagaaatgcgaaaacccctggtaagctcttatccttgtgaagcctctcctggagagggaaggccactgtcacaacacactcttccaca |
214 |
Q |
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|| ||||||||||||| || | ||||||||| |||| || | | ||||| |||||||| ||||||||| | ||||||||| || ||||||||| |
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| T |
2923452 |
tccctgtaggaagaaaggcatagacccctggtgagcttttgcctctatgaagtctctcctgattagggaaggctagtgtcacaacccattcttccaca |
2923549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 2932864 - 2932931
Alignment:
| Q |
164 |
tgaagcctctcctggagagggaaggccactgtcacaacacactcttccacacacattctcctttccac |
231 |
Q |
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|||||||||||||| | |||||||||| |||||||||||||||||||||| | ||||||||||||| |
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| T |
2932864 |
tgaagcctctcctgacgtgggaaggccaatgtcacaacacactcttccacatcctttctcctttccac |
2932931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 1504371 - 1504175
Alignment:
| Q |
11 |
acataatcaagtatccctttattccacttatcatccaagagaattgtctcccttgacgaggcaagaacaaaatctgcctgaattatgaatggaaaattag |
110 |
Q |
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||||| ||||||||||||| ||||||||||| |||||| | ||||||||||||||| || ||||| | ||||||||||||||||||||| |||||||||| |
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| T |
1504371 |
acatattcaagtatcccttgattccacttattatccaacataattgtctcccttgatgaagcaaggaaaaaatctgcctgaattatgaaaggaaaattag |
1504272 |
T |
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| Q |
111 |
tgaccatctctgtaggaagaaatgcgaaaacccctggtaagctcttatccttgtgaagcctctcctggagagggaaggccactgtcacaacacactc |
207 |
Q |
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||||||| ||||||||||||||||| | |||||||| ||| |||| || ||| |||||||||||| ||||| |||| ||||||||| ||||| |
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| T |
1504271 |
tgaccatttctgtaggaagaaatgcatagacccctggcaaggtctttcccctgtaaagcctctcctgatttgggaatgccaatgtcacaacccactc |
1504175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 4914151 - 4913953
Alignment:
| Q |
17 |
tcaagtatccctttattccacttatcatccaagagaattgtctcccttgacgaggcaagaacaaaatctgcctgaattatgaatggaaaattagtgacca |
116 |
Q |
| |
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||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||| |||||||| || ||||||||||| ||||||||||||||| |
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| T |
4914151 |
tcaagtatcccttgattccacttattatccaagagaattgtctcccttgatgaggcaaggacaaaatcagcttgaattatgaaaggaaaattagtgacc- |
4914053 |
T |
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| Q |
117 |
tctctgtaggaagaaatgcgaaaacccctggtaagctcttatccttgtgaagcctctcctggagagggaaggccactgtcacaacacactcttccacaca |
216 |
Q |
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| T |
4914052 |
---------------atgcataaacccctggtaagctcttattcttgtgaagcctctcttgatgtgggaagaccaacgtcacaacacagtcttccacgcc |
4913968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 28026903 - 28027100
Alignment:
| Q |
17 |
tcaagtatccctttattccacttatcatccaagagaattgtctcccttgacgaggcaagaacaaaatctgcctgaattatgaatggaaaattagtgacca |
116 |
Q |
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||||||||||||| ||||| |||| |||||||||||||||||||||||| || ||||| |||||||| || ||||| ||||| |||||||||||||||| |
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| T |
28026903 |
tcaagtatcccttggttccatttattatccaagagaattgtctcccttgatgaagcaaggacaaaatcggcttgaataatgaaaggaaaattagtgacca |
28027002 |
T |
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| Q |
117 |
tctctgtaggaagaaatgcgaaaacccctggtaagctcttatccttgtgaagcctctcctggagagggaaggccactgtcacaacacactcttccaca |
214 |
Q |
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|||||||||| |||||||| | ||||| ||| |||| ||| || |||||||||||||||| || ||||| | ||||||||| || ||||||||| |
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| T |
28027003 |
tctctgtaggcagaaatgcatagacccccggtgagcttttacccctgtgaagcctctcctgatttggcaaggcgagtgtcacaacccattcttccaca |
28027100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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