View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6405_low_1 (Length: 328)

Name: NF6405_low_1
Description: NF6405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6405_low_1
NF6405_low_1
[»] chr3 (6 HSPs)
chr3 (152-209)||(42908072-42908129)
chr3 (279-321)||(42908239-42908281)
chr3 (153-204)||(53351407-53351458)
chr3 (1-133)||(42907928-42908058)
chr3 (162-209)||(45158730-45158777)
chr3 (162-204)||(52404151-52404193)
[»] chr8 (4 HSPs)
chr8 (152-209)||(597379-597436)
chr8 (162-208)||(32492962-32493008)
chr8 (161-209)||(39375383-39375431)
chr8 (279-321)||(597548-597591)
[»] chr1 (4 HSPs)
chr1 (153-208)||(49241949-49242004)
chr1 (161-204)||(33690331-33690374)
chr1 (161-209)||(5384571-5384618)
chr1 (161-209)||(40959977-40960025)
[»] chr5 (2 HSPs)
chr5 (152-209)||(33111862-33111919)
chr5 (162-209)||(389499-389546)
[»] scaffold0116 (1 HSPs)
scaffold0116 (153-204)||(8073-8124)
[»] chr4 (4 HSPs)
chr4 (161-201)||(19916321-19916361)
chr4 (162-209)||(1936264-1936311)
chr4 (163-209)||(25232435-25232481)
chr4 (169-209)||(55675726-55675766)
[»] chr2 (1 HSPs)
chr2 (166-209)||(35333071-35333114)
[»] chr7 (1 HSPs)
chr7 (163-209)||(5419134-5419179)


Alignment Details
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 42908072 - 42908129
Alignment:
Q  152 gagaaaactagaaatatattttgatttgcatatctattaataataatataatatgtag 209  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42908072 gagaaaactagaaatatattttgatttgcatatctattaatattaatataatatgtag 42908129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 42908239 - 42908281
Alignment:
Q  279 gaacaaaagaaaatagatgtgtatttttcttgaatgatgatgt 321  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  42908239 gaacaaaagaaaatagatgtgtatttttcttgaatgatgatgt 42908281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 53351407 - 53351458
Alignment:
Q  153 agaaaactagaaatatattttgatttgcatatctattaataataatataata 204  Q
    ||||||| | ||||||||||||||||||||||||||||||| ||||||||||    
T  53351407 agaaaacaaaaaatatattttgatttgcatatctattaatattaatataata 53351458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 42907928 - 42908058
Alignment:
Q  1 tatttaactagattaaagctgtttgaactaatgacgctaccattttaaaactaaaaatatttaattgttatattaatgcttgtataattatannnnnnna 100  Q
    ||||||||||||||||| | | ||||||  ||||| | |||| || |||| ||||| ||| |||||  ||||||||||||||||||| ||||       |    
T  42907928 tatttaactagattaaatcggattgaaccgatgactcgaccacttaaaaattaaaa-tatgtaatttgtatattaatgcttgtataactatatttttt-a 42908025  T
Q  101 aaaagagtatatctatatttcgttgataagaaa 133  Q
    |||||||||||||||||||||||||| ||||||    
T  42908026 aaaagagtatatctatatttcgttgacaagaaa 42908058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 45158730 - 45158777
Alignment:
Q  162 gaaatatattttgatttgcatatctattaataataatataatatgtag 209  Q
    |||||| |||||| ||||||||| |||||||| |||||||||||||||    
T  45158730 gaaatagattttgttttgcatatatattaatattaatataatatgtag 45158777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 52404193 - 52404151
Alignment:
Q  162 gaaatatattttgatttgcatatctattaataataatataata 204  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||    
T  52404193 gaaatatattttgttttgcatatatattaatattaatataata 52404151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 597379 - 597436
Alignment:
Q  152 gagaaaactagaaatatattttgatttgcatatctattaataataatataatatgtag 209  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  597379 gagaaaactagaaatatattttgatttgcatatctattaatattaatataatacgtag 597436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 32493008 - 32492962
Alignment:
Q  162 gaaatatattttgatttgcatatctattaataataatataatatgta 208  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||||||    
T  32493008 gaaatatattttgttttgcatatatattaatattaatataatatgta 32492962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 39375383 - 39375431
Alignment:
Q  161 agaaatatattttgatttgcatatctattaataataatataatatgtag 209  Q
    ||||||| |||||| ||||||||| |||||||| |||||||||||||||    
T  39375383 agaaataaattttgttttgcatatatattaatattaatataatatgtag 39375431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 597548 - 597591
Alignment:
Q  279 gaacaaaagaaaatagatgtgta-tttttcttgaatgatgatgt 321  Q
    ||||||||||||||||||||||| |||||||| |||||||||||    
T  597548 gaacaaaagaaaatagatgtgtattttttcttaaatgatgatgt 597591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 49241949 - 49242004
Alignment:
Q  153 agaaaactagaaatatattttgatttgcatatctattaataataatataatatgta 208  Q
    ||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||    
T  49241949 agaaaacaaaaaatatattttgatttgcatatctattaatattaatataatatgta 49242004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 33690331 - 33690374
Alignment:
Q  161 agaaatatattttgatttgcatatctattaataataatataata 204  Q
    |||||||||||||||||| |||||||||||||| ||||||||||    
T  33690331 agaaatatattttgatttacatatctattaatattaatataata 33690374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 5384618 - 5384571
Alignment:
Q  161 agaaatatattttgatttgcatatctattaataataatataatatgtag 209  Q
    ||||||| |||||| ||||||||| |||||||| |||||||||||||||    
T  5384618 agaaatagattttg-tttgcatatatattaatattaatataatatgtag 5384571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 40960025 - 40959977
Alignment:
Q  161 agaaatatattttgatttgcatatctattaataataatataatatgtag 209  Q
    ||||||| |||||| |||||||||||||||||| ||| |||||| ||||    
T  40960025 agaaataaattttgttttgcatatctattaatattaacataatacgtag 40959977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 33111919 - 33111862
Alignment:
Q  152 gagaaaactagaaatatattttgatttgcatatctattaataataatataatatgtag 209  Q
    ||||||||||||||||||||||||||| | |||||||||||| |||||||||| ||||    
T  33111919 gagaaaactagaaatatattttgattttcttatctattaatattaatataatacgtag 33111862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 389546 - 389499
Alignment:
Q  162 gaaatatattttgatttgcatatctattaataataatataatatgtag 209  Q
    |||||| |||||| ||||||||| |||||||| |||||||||||||||    
T  389546 gaaatagattttgttttgcatatatattaatattaatataatatgtag 389499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 8073 - 8124
Alignment:
Q  153 agaaaactagaaatatattttgatttgcatatctattaataataatataata 204  Q
    ||||||| | ||||||||||||||||||||||||||||||| ||||||||||    
T  8073 agaaaacaaaaaatatattttgatttgcatatctattaatattaatataata 8124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 19916361 - 19916321
Alignment:
Q  161 agaaatatattttgatttgcatatctattaataataatata 201  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  19916361 agaaatatattttgatttgcatatttattaatattaatata 19916321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 1936311 - 1936264
Alignment:
Q  162 gaaatatattttgatttgcatatctattaataataatataatatgtag 209  Q
    |||||| |||||| ||||||||| |||||||| |||||||||||||||    
T  1936311 gaaatagattttgttttgcatatatattaatattaatataatatgtag 1936264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 25232481 - 25232435
Alignment:
Q  163 aaatatattttgatttgcatatctattaataataatataatatgtag 209  Q
    ||||| |||||| ||||||||| |||||||| |||||||||||||||    
T  25232481 aaatagattttgttttgcatatatattaatattaatataatatgtag 25232435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 55675726 - 55675766
Alignment:
Q  169 attttgatttgcatatctattaataataatataatatgtag 209  Q
    |||||| ||||||||| |||||||| |||||||||||||||    
T  55675726 attttgttttgcatatatattaatattaatataatatgtag 55675766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 35333071 - 35333114
Alignment:
Q  166 tatattttgatttgcatatctattaataataatataatatgtag 209  Q
    ||||||||| |||||||||||||||||| || ||||||||||||    
T  35333071 tatattttgttttgcatatctattaatattactataatatgtag 35333114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 5419134 - 5419179
Alignment:
Q  163 aaatatattttgatttgcatatctattaataataatataatatgtag 209  Q
    ||||| |||||| ||| ||||||||||||||||||||||||||||||    
T  5419134 aaatagattttgtttt-catatctattaataataatataatatgtag 5419179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University