View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6405_low_2 (Length: 304)
Name: NF6405_low_2
Description: NF6405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6405_low_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 32640290 - 32640027
Alignment:
| Q |
16 |
tatttttcttgtttaccatgattttattaaggatttcacaactaattcaaaaaa-ctaccttaatttcagtgtgttagagaaatcctaattacaaaccct |
114 |
Q |
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| T |
32640290 |
tatttttcttgtttaccatgattttattaaggatttcacaactaattcaaaaaaactacctaaatttcagtgtgttagagaaatcctaattacaaaccct |
32640191 |
T |
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| Q |
115 |
caacatacaaatgataaaaccatatgtggtctaacggtattgagtttatattactannnnnnncgttttctcacttgacctctataaatacaccatacca |
214 |
Q |
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| T |
32640190 |
caacctacaaatgataaaaccatatgtggtctaacggtattgagtttatattactatttttttcgttttctcacttgacctctataaatacaccatacca |
32640091 |
T |
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| Q |
215 |
tttatccaaattctcaatcatttttccataccattatacttcttttgcatcatgcctgcttctt |
278 |
Q |
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| T |
32640090 |
ttcatccaaattctcaatcatttttccataccattatacttcttttgcatcatgcctgcttctt |
32640027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 178 - 304
Target Start/End: Original strand, 32635349 - 32635475
Alignment:
| Q |
178 |
cgttttctcacttgacctctataaatacaccataccatttatccaaattctcaatcatttttccataccattatacttcttttgcatcatgcctgcttct |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||| || ||||||| |
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| T |
32635349 |
cgttttctcacttgacctctataaatacaccataccattcatccaaattcaaaatcattttttcataccattatacttcttttgcataatttctgcttcc |
32635448 |
T |
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| Q |
278 |
ttttcagattctatttcttcttcttct |
304 |
Q |
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| T |
32635449 |
actttagattatatttcttctccttct |
32635475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 377294 - 377349
Alignment:
| Q |
209 |
ataccatttatccaaattctcaatcatttttccataccattatacttcttttgcat |
264 |
Q |
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| T |
377294 |
ataccattcatccaaattcacaatcattttttcatacatttctacttcttttgcat |
377349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 304
Target Start/End: Original strand, 36902091 - 36902197
Alignment:
| Q |
196 |
ctataaatacaccataccatttatccaaattctcaatcatttttccataccattatacttcttttgcatcatgcctgcttctttttcagattctatttct |
295 |
Q |
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| T |
36902091 |
ctataaatattccataccattcatccaaatttacagtcatttt--catacatttctacttcttttgcatcactcctgcttctgctttcgattctatttcc |
36902188 |
T |
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| Q |
296 |
tcttcttct |
304 |
Q |
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||| ||||| |
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| T |
36902189 |
tctccttct |
36902197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 38349628 - 38349700
Alignment:
| Q |
196 |
ctataaatacaccataccatttatccaaattctcaatcatttttccataccattatacttcttttgcatcatg |
268 |
Q |
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|||| ||| |||||||| ||| |||||||||| ||||||||||| ||||| || ||||| ||||| |||||| |
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| T |
38349628 |
ctattaattcaccatactattcatccaaattcacaatcattttttcatacatttctacttattttgaatcatg |
38349700 |
T |
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