View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6405_low_3 (Length: 237)

Name: NF6405_low_3
Description: NF6405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6405_low_3
NF6405_low_3
[»] chr3 (29 HSPs)
chr3 (29-177)||(42907769-42907917)
chr3 (30-177)||(29727737-29727885)
chr3 (30-177)||(51537144-51537292)
chr3 (54-177)||(53351171-53351294)
chr3 (41-177)||(42217128-42217264)
chr3 (41-177)||(15100604-15100740)
chr3 (77-177)||(23241865-23241965)
chr3 (77-177)||(30465089-30465189)
chr3 (41-177)||(35054676-35054812)
chr3 (77-180)||(55258087-55258190)
chr3 (77-177)||(37599876-37599976)
chr3 (77-177)||(39850695-39850795)
chr3 (82-177)||(33634883-33634978)
chr3 (95-176)||(11412513-11412594)
chr3 (76-177)||(29025259-29025360)
chr3 (77-177)||(2849268-2849367)
chr3 (77-177)||(26725552-26725644)
chr3 (108-177)||(10259228-10259297)
chr3 (56-177)||(11018705-11018825)
chr3 (41-125)||(44832455-44832539)
chr3 (42-112)||(5123819-5123889)
chr3 (41-125)||(52404317-52404401)
chr3 (41-122)||(3046499-3046579)
chr3 (105-178)||(11676262-11676334)
chr3 (53-177)||(11574994-11575118)
chr3 (67-115)||(41459667-41459715)
chr3 (41-177)||(41462321-41462457)
chr3 (71-119)||(45158518-45158566)
chr3 (43-95)||(53724135-53724187)
[»] chr5 (22 HSPs)
chr5 (29-177)||(33112161-33112309)
chr5 (30-177)||(6273128-6273276)
chr5 (30-177)||(14351893-14352041)
chr5 (30-177)||(17644161-17644309)
chr5 (41-175)||(13956932-13957066)
chr5 (30-177)||(35456507-35456655)
chr5 (45-182)||(32383859-32383996)
chr5 (53-177)||(6459707-6459831)
chr5 (30-177)||(18942249-18942397)
chr5 (77-177)||(36745870-36745970)
chr5 (77-177)||(38040623-38040723)
chr5 (54-177)||(29823257-29823380)
chr5 (76-177)||(27194774-27194875)
chr5 (77-177)||(35758035-35758135)
chr5 (77-177)||(8761097-8761197)
chr5 (76-177)||(14635345-14635446)
chr5 (77-177)||(40143904-40144004)
chr5 (76-177)||(3752454-3752555)
chr5 (137-178)||(389717-389758)
chr5 (65-117)||(23015093-23015145)
chr5 (76-115)||(26166212-26166251)
chr5 (100-177)||(17421303-17421380)
[»] chr1 (42 HSPs)
chr1 (30-177)||(33690159-33690306)
chr1 (30-177)||(32364121-32364269)
chr1 (30-178)||(3014127-3014275)
chr1 (32-177)||(49241642-49241787)
chr1 (41-177)||(3252226-3252362)
chr1 (41-177)||(44410712-44410848)
chr1 (44-177)||(962465-962598)
chr1 (56-177)||(18032287-18032408)
chr1 (45-133)||(3794189-3794277)
chr1 (41-177)||(42866278-42866414)
chr1 (41-177)||(24638702-24638835)
chr1 (71-177)||(37034875-37034981)
chr1 (76-177)||(3355400-3355501)
chr1 (53-177)||(20725983-20726107)
chr1 (77-177)||(28234799-28234899)
chr1 (77-177)||(44257770-44257870)
chr1 (41-117)||(46545440-46545516)
chr1 (42-125)||(4225048-4225131)
chr1 (67-117)||(11191403-11191453)
chr1 (77-178)||(46535277-46535370)
chr1 (53-177)||(45774760-45774880)
chr1 (43-177)||(50323330-50323464)
chr1 (105-177)||(1846926-1846998)
chr1 (53-177)||(45193178-45193302)
chr1 (52-133)||(17857925-17858006)
chr1 (80-177)||(20117850-20117947)
chr1 (64-117)||(50358956-50359009)
chr1 (77-125)||(12792714-12792762)
chr1 (41-177)||(16914457-16914593)
chr1 (45-97)||(45484228-45484280)
chr1 (64-108)||(52585217-52585261)
chr1 (76-151)||(24984170-24984245)
chr1 (143-177)||(5384835-5384869)
chr1 (64-114)||(19554184-19554234)
chr1 (45-175)||(40960183-40960313)
chr1 (77-119)||(48303206-48303248)
chr1 (76-114)||(51727119-51727157)
chr1 (64-117)||(4331948-4332001)
chr1 (76-133)||(17948617-17948674)
chr1 (42-119)||(27415198-27415275)
chr1 (96-177)||(41983794-41983875)
chr1 (41-177)||(31986052-31986188)
[»] chr7 (31 HSPs)
chr7 (30-177)||(46170641-46170789)
chr7 (42-181)||(10198303-10198442)
chr7 (43-177)||(16216974-16217108)
chr7 (53-177)||(10992695-10992819)
chr7 (53-177)||(34259253-34259377)
chr7 (54-177)||(9822519-9822642)
chr7 (54-177)||(10724444-10724567)
chr7 (52-175)||(5418899-5419018)
chr7 (46-178)||(31813487-31813619)
chr7 (45-177)||(34191874-34192006)
chr7 (76-177)||(44605934-44606035)
chr7 (77-177)||(11734245-11734345)
chr7 (42-122)||(33610645-33610725)
chr7 (54-177)||(45269430-45269553)
chr7 (76-177)||(24096722-24096823)
chr7 (77-177)||(36099691-36099791)
chr7 (77-177)||(36858133-36858233)
chr7 (45-182)||(17833661-17833797)
chr7 (41-117)||(25069358-25069434)
chr7 (77-177)||(29983235-29983335)
chr7 (67-177)||(1582155-1582265)
chr7 (88-177)||(14801974-14802063)
chr7 (88-177)||(15248966-15249055)
chr7 (77-177)||(47423453-47423545)
chr7 (48-177)||(16198683-16198811)
chr7 (41-175)||(33628226-33628360)
chr7 (100-177)||(30801677-30801754)
chr7 (41-125)||(25830139-25830223)
chr7 (51-111)||(46004153-46004212)
chr7 (80-177)||(20623149-20623246)
chr7 (56-125)||(45498883-45498951)
[»] chr8 (26 HSPs)
chr8 (30-168)||(28761636-28761775)
chr8 (60-177)||(597234-597350)
chr8 (57-177)||(32493168-32493288)
chr8 (42-177)||(36833904-36834039)
chr8 (76-177)||(42063462-42063563)
chr8 (77-177)||(19726716-19726816)
chr8 (77-178)||(30360454-30360555)
chr8 (77-177)||(40485556-40485656)
chr8 (77-177)||(41726361-41726461)
chr8 (41-177)||(18656599-18656727)
chr8 (77-177)||(13487153-13487252)
chr8 (54-177)||(8014901-8015024)
chr8 (80-177)||(3655857-3655954)
chr8 (77-177)||(31008538-31008638)
chr8 (41-125)||(39375166-39375250)
chr8 (41-176)||(44056469-44056604)
chr8 (53-146)||(6545714-6545807)
chr8 (80-177)||(14910095-14910192)
chr8 (41-117)||(4455322-4455398)
chr8 (77-125)||(5970006-5970054)
chr8 (53-133)||(29867772-29867852)
chr8 (77-125)||(36658559-36658607)
chr8 (88-177)||(26403638-26403727)
chr8 (69-125)||(20821791-20821847)
chr8 (53-117)||(45219507-45219571)
chr8 (69-116)||(31893201-31893248)
[»] chr2 (35 HSPs)
chr2 (30-177)||(16106670-16106818)
chr2 (44-177)||(6065481-6065614)
chr2 (41-177)||(35305263-35305399)
chr2 (30-177)||(21800638-21800786)
chr2 (41-177)||(37484403-37484539)
chr2 (54-177)||(19881939-19882062)
chr2 (54-177)||(32878694-32878817)
chr2 (52-177)||(10810536-10810661)
chr2 (77-177)||(24128753-24128853)
chr2 (71-177)||(3988705-3988811)
chr2 (80-177)||(17513020-17513117)
chr2 (77-177)||(16457751-16457851)
chr2 (77-177)||(23293189-23293289)
chr2 (77-177)||(39061932-39062024)
chr2 (77-176)||(31900414-31900505)
chr2 (52-177)||(12365511-12365636)
chr2 (77-177)||(7153437-7153536)
chr2 (77-177)||(37314945-37315037)
chr2 (40-178)||(39761825-39761963)
chr2 (77-178)||(39678303-39678404)
chr2 (45-125)||(26606583-26606663)
chr2 (41-177)||(27905622-27905758)
chr2 (54-177)||(23250969-23251092)
chr2 (77-177)||(29523894-29523986)
chr2 (55-178)||(29781415-29781538)
chr2 (76-128)||(14885340-14885392)
chr2 (82-177)||(18540658-18540753)
chr2 (52-122)||(20907126-20907196)
chr2 (71-177)||(22315188-22315294)
chr2 (52-122)||(24934893-24934963)
chr2 (52-122)||(25683585-25683655)
chr2 (180-222)||(29743743-29743785)
chr2 (77-177)||(37255988-37256088)
chr2 (41-177)||(40404311-40404447)
chr2 (53-117)||(43869924-43869988)
[»] chr4 (29 HSPs)
chr4 (30-177)||(19916387-19916534)
chr4 (30-177)||(4414415-4414563)
chr4 (41-180)||(8132788-8132927)
chr4 (41-177)||(25232638-25232774)
chr4 (31-177)||(6354926-6355073)
chr4 (41-177)||(1936474-1936610)
chr4 (77-177)||(23611540-23611640)
chr4 (41-177)||(43245683-43245819)
chr4 (49-177)||(54822047-54822175)
chr4 (30-121)||(7362176-7362267)
chr4 (77-177)||(11792384-11792484)
chr4 (54-178)||(24394072-24394196)
chr4 (41-177)||(55675420-55675556)
chr4 (41-178)||(12704623-12704760)
chr4 (41-177)||(26203644-26203780)
chr4 (48-182)||(24776140-24776274)
chr4 (77-182)||(28359678-28359783)
chr4 (48-116)||(2039143-2039211)
chr4 (67-135)||(38519329-38519397)
chr4 (42-112)||(18707455-18707525)
chr4 (48-178)||(44352086-44352216)
chr4 (76-124)||(7648075-7648123)
chr4 (77-125)||(55497505-55497553)
chr4 (41-127)||(38465218-38465304)
chr4 (76-125)||(13428781-13428830)
chr4 (53-117)||(293529-293593)
chr4 (89-181)||(2859415-2859507)
chr4 (41-177)||(25510487-25510623)
chr4 (80-180)||(34856004-34856104)
[»] chr6 (13 HSPs)
chr6 (42-177)||(6817290-6817425)
chr6 (45-177)||(23595691-23595823)
chr6 (77-177)||(24068200-24068300)
chr6 (30-177)||(29419724-29419863)
chr6 (77-177)||(30269593-30269693)
chr6 (43-178)||(30426317-30426452)
chr6 (76-177)||(8464281-8464382)
chr6 (76-177)||(21289551-21289651)
chr6 (52-122)||(35166055-35166125)
chr6 (80-125)||(22351258-22351303)
chr6 (53-125)||(34779909-34779981)
chr6 (53-108)||(19763413-19763468)
chr6 (71-175)||(31513370-31513474)
[»] scaffold0116 (1 HSPs)
scaffold0116 (32-177)||(7839-7974)
[»] scaffold0231 (1 HSPs)
scaffold0231 (80-177)||(11039-11136)
[»] scaffold0070 (1 HSPs)
scaffold0070 (77-177)||(12721-12821)
[»] scaffold0242 (1 HSPs)
scaffold0242 (76-146)||(17854-17924)
[»] scaffold0036 (1 HSPs)
scaffold0036 (76-177)||(51909-52010)
[»] scaffold0131 (1 HSPs)
scaffold0131 (41-117)||(7840-7916)
[»] scaffold0712 (1 HSPs)
scaffold0712 (30-178)||(4883-5031)
[»] scaffold0709 (1 HSPs)
scaffold0709 (30-178)||(4903-5051)
[»] scaffold0043 (1 HSPs)
scaffold0043 (55-178)||(64344-64467)
[»] scaffold0009 (1 HSPs)
scaffold0009 (180-224)||(147436-147480)
[»] scaffold0045 (1 HSPs)
scaffold0045 (64-108)||(29507-29551)


Alignment Details
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 42907917 - 42907769
Alignment:
Q  29 gttaatcttaagccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaata 128  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||     
T  42907917 gttaatcctaagccgagtcatctaaccgagtaatacggtttaatccggttcagtcatgcggttcaaccaatgactcagtggttcgaccattaacctaatg 42907818  T
Q  129 acccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    ||||| |||||||||||| ||||| |||||||||| |||||||||||||    
T  42907817 acccagtgcccctgccgagtcgacaaccgagccgagttttaaaactatg 42907769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 30 - 177
Target Start/End: Complemental strand, 29727885 - 29727737
Alignment:
Q  30 ttaatcttaag-ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaata 128  Q
    ||||||||||| |||||||||||||| ||||||| |||||||||||  |||||||||| |||||||| | |||||||||||||| ||||||||||||||     
T  29727885 ttaatcttaagaccgagtcatctaactgagttatccggtttaatccgattcagtcatgcggttcaactagtgactcagtggttcaaccattaacccaatg 29727786  T
Q  129 acccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    ||||||| ||||||||||||||| ||||||||||| |||||||||||||    
T  29727785 acccaatacccctgccgaatcgatgaccgagccgagttttaaaactatg 29727737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 30 - 177
Target Start/End: Original strand, 51537144 - 51537292
Alignment:
Q  30 ttaatcttaag-ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaata 128  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||  ||||| |||| |||||||||| |||| |||||||||||||||||||||| |     
T  51537144 ttaatcttaagaccgagtcatctaaccgagttatccggtttaatccgattcagacatgcggttcaaccagtgacccagtggttcgaccattaacccagtg 51537243  T
Q  129 acccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    ||||||| |||||||||| |||| ||||||||||| |||||||||||||    
T  51537244 acccaatacccctgccgagtcgatgaccgagccgagttttaaaactatg 51537292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 53351294 - 53351171
Alignment:
Q  54 ccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacg 153  Q
    ||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||| |||||||||| ||| ||||| | |||||||||| |||| |    
T  53351294 ccgagttatccggtttaatccggttcagtcatgcggttcaaccaacgactcagtggttcaaccattaacctaatgacccagtacccctgccgagtcgatg 53351195  T
Q  154 accgagccgaattttaaaactatg 177  Q
    |||||||||| |||||||||||||    
T  53351194 accgagccgagttttaaaactatg 53351171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 41 - 177
Target Start/End: Original strand, 42217128 - 42217264
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccc 140  Q
    |||||||||||| ||||||||| |||||||||||  |||||||||| |||||||||| |||||||||||||||||||||||| |||| ||||| | ||      
T  42217128 ccgagtcatctagccgagttattcggtttaatccgattcagtcatgcggttcaaccagtgactcagtggttcgaccattaactcaatgacccagtacctt 42217227  T
Q  141 tgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    | |||| |||| ||||||||||| |||||||||||||    
T  42217228 taccgagtcgatgaccgagccgagttttaaaactatg 42217264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 177
Target Start/End: Complemental strand, 15100740 - 15100604
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccc 140  Q
    ||||||||| || ||||||||| |||||||||||  |||||||||| ||||||| || ||||||||||||||||||||||||||||| |||||||  ||     
T  15100740 ccgagtcatttagccgagttattcggtttaatccgattcagtcatgcggttcaatcagtgactcagtggttcgaccattaacccaatgacccaatatcct 15100641  T
Q  141 tgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    |  ||| |||| || |||||||| |||||||||||||    
T  15100640 tatcgagtcgatgatcgagccgagttttaaaactatg 15100604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 23241865 - 23241965
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||| ||||||||||||||||| ||||| | ||||||| |||| ||||| |||| ||||||||||||||||||||||||    
T  23241865 ttcagtcatgcggttcgaccaatgattcagtggttcgaccattgacccattgacccaatacccccgccgagtcgatgaccgagccgaattttaaaactat 23241964  T
Q  177 g 177  Q
    |    
T  23241965 g 23241965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 30465089 - 30465189
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||| | ||||| | |||| ||||| |||| ||||||||||||||||||||||||    
T  30465089 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgaattttaaaactat 30465188  T
Q  177 g 177  Q
    |    
T  30465189 g 30465189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 41 - 177
Target Start/End: Original strand, 35054676 - 35054812
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccc 140  Q
    |||||||| || | ||||||||  |||||||| | ||||||||||| |||||||||| |||| || |||||||||||||||| || | ||||| | |||     
T  35054676 ccgagtcaacttatcgagttatttggtttaattcggttcagtcatgcggttcaaccagtgacccaatggttcgaccattaactcactgacccagtaccca 35054775  T
Q  141 tgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    |||||| |||| ||||||||||| |||||||||||||    
T  35054776 tgccgagtcgatgaccgagccgagttttaaaactatg 35054812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 77 - 180
Target Start/End: Original strand, 55258087 - 55258190
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||| | ||||| | ||||  |||| |||| ||||||||||| ||||||||||||    
T  55258087 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccaccgagtcgatgaccgagccgagttttaaaactat 55258186  T
Q  177 gtat 180  Q
    ||||    
T  55258187 gtat 55258190  T

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Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 37599876 - 37599976
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| | ||| | ||||| | |||| ||| | |||| ||||||||||| ||||||||||||    
T  37599876 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgatccattgacccagtacccccgccaagtcgatgaccgagccgagttttaaaactat 37599975  T
Q  177 g 177  Q
    |    
T  37599976 g 37599976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 39850795 - 39850695
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||| ||||| ||||| |||||||||||||||||||||||||| ||||| | ||| | | |||| ||||| |||| ||||||||||| ||||||||||||    
T  39850795 ttcaatcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacctagtacccccgccgagtcgatgaccgagccgagttttaaaactat 39850696  T
Q  177 g 177  Q
    |    
T  39850695 g 39850695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 33634978 - 33634883
Alignment:
Q  82 tcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    ||||| ||||| |||||||||||||||||||||||||| ||||| ||||||| | |||| ||||| |||| || ||| |||| |||||||||||||    
T  33634978 tcatgcggttcgaccaatgactcagtggttcgaccattgacccattaacccagtacccccgccgagtcgatgatcgaaccgagttttaaaactatg 33634883  T

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Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 11412513 - 11412594
Alignment:
Q  95 ccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    ||||||||||||||||||||||| | ||||| | ||||||| ||| |||||| |||| ||||||||||| ||||||||||||    
T  11412513 ccaatgactcagtggttcgaccaatgacccagtgacccaatacccttgccgagtcgatgaccgagccgagttttaaaactat 11412594  T

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Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 177
Target Start/End: Complemental strand, 29025360 - 29025259
Alignment:
Q  76 gttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaacta 175  Q
    ||||||||||| ||||| |||||||||||| |||||| |||||| ||||| | ||||| | |||| ||||| |||| |||||||| || |||||||||||    
T  29025360 gttcagtcatgcggttcgaccaatgactcactggttcaaccattgacccattgacccagtacccccgccgagtcgatgaccgagctgagttttaaaacta 29025261  T
Q  176 tg 177  Q
    ||    
T  29025260 tg 29025259  T

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Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 2849268 - 2849367
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||| || |||||||||||||||| | ||||| |  |||  |||| |||| ||||||||||| ||||||||||||    
T  2849268 ttcagtcatgcggttcgaccaatgactcaatgattcgaccattaacccattgacccagtatccc-accgagtcgatgaccgagccgagttttaaaactat 2849366  T

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Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 26725644 - 26725552
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||| ||||||||||||||||||| ||||||||        |||| ||| |||||| ||||||||||| ||||||||||||    
T  26725644 ttcagtcatgcggttcgaccaataactcagtggttcgaccattgacccaata--------cccccgccaaatcgatgaccgagccgagttttaaaactat 26725553  T

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Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 10259228 - 10259297
Alignment:
Q  108 ggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    |||||||||||||||||| | ||||| | |||| ||||| |||| ||||||||||| |||||||||||||    
T  10259228 ggttcgaccattaacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 10259297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 177
Target Start/End: Complemental strand, 11018825 - 11018705
Alignment:
Q  56 gagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgac 155  Q
    ||||||| ||||||||||| ||||||| ||| ||||| |||||||||||| ||||| ||  ||| | ||| | ||||| | ||||  |||| |||| |||    
T  11018825 gagttatccggtttaatccggttcagttatgcggttcgaccaatgactcactggtttgattattgatccagtgacccagtacccc-accgagtcgatgac 11018727  T
Q  156 cgagccgaattttaaaactatg 177  Q
    |||||||| |||||||||||||    
T  11018726 cgagccgagttttaaaactatg 11018705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 44832539 - 44832455
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaaccca 125  Q
    |||||| ||||||||||||||| ||  |   ||| ||||||||||| ||||| ||||||||||| |||||||||||||| |||||    
T  44832539 ccgagttatctaaccgagttatccgagtggttccggttcagtcatgcggttcgaccaatgactcggtggttcgaccattgaccca 44832455  T

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Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 5123889 - 5123819
Alignment:
Q  42 cgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttc 112  Q
    ||||| |||||||||||| || ||  || |||||||||| ||||| |||||||||||||||||| ||||||    
T  5123889 cgagttatctaaccgagtcatccgagttgatccagttcattcatgcggttcaaccaatgactcaatggttc 5123819  T

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Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 52404317 - 52404401
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaaccca 125  Q
    |||||| |||||||||||| || ||  || |||| ||| | ||||| ||||| |||||||||||||||||| ||||||| |||||    
T  52404317 ccgagttatctaaccgagtcatccgagttgatccggtttaatcatgcggttcgaccaatgactcagtggtttgaccattgaccca 52404401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 3046579 - 3046499
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaac 122  Q
    |||||||| || |||||||||| | ||||||||  ||||||||||| |||||||| | |||  ||||||||||||| |||||    
T  3046579 ccgagtcaacttaccgagttattcagtttaatcg-gttcagtcatgcggttcaactagtgatccagtggttcgaccgttaac 3046499  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 11676262 - 11676334
Alignment:
Q  105 agtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatgt 178  Q
    ||||||||||||||| ||||| | ||||| | |||| ||||| |||| ||||||||| | ||||||||||||||    
T  11676262 agtggttcgaccattgacccattgacccagtacccc-gccgagtcgatgaccgagccaagttttaaaactatgt 11676334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 177
Target Start/End: Complemental strand, 11575118 - 11574994
Alignment:
Q  53 accgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgac 152  Q
    ||||||| || |||||| ||||  |||||||| | ||||||||||||||| |  ||||||||||||  |  |||| ||||| | ||  |||||| ||||     
T  11575118 accgagtcatccggtttgatccgattcagtcacgcggttcaaccaatgacccgatggttcgaccatcgattcaatgacccagtacctatgccgagtcgat 11575019  T
Q  153 gaccgagccgaattttaaaactatg 177  Q
    || |||| ||| |||||||||||||    
T  11575018 gatcgagtcgagttttaaaactatg 11574994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 41459667 - 41459715
Alignment:
Q  67 tttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgac 115  Q
    |||||| ||||||||||||| ||||| ||||||||| || |||||||||    
T  41459667 tttaatacagttcagtcatgcggttcgaccaatgacccaatggttcgac 41459715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 177
Target Start/End: Original strand, 41462321 - 41462457
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccc 140  Q
    |||||| |||| ||||| | || ||||||||||   |||||||||| |||||||| | |||| |  ||||||||||||  || || | ||||| | ||      
T  41462321 ccgagttatcttaccgaatcatccggtttaatcagattcagtcatgcggttcaacaagtgacccgatggttcgaccatcgactcagtgacccagtaccta 41462420  T
Q  141 tgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    || ||| |||| ||||||||||| |||||||||||||    
T  41462421 tgtcgagtcgatgaccgagccgagttttaaaactatg 41462457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 45158566 - 45158518
Alignment:
Q  71 atccagttcagtcatgtggttcaaccaatgactcagtggttcgaccatt 119  Q
    |||| ||||||||||| ||||| ||||||||||| ||||||| ||||||    
T  45158566 atccggttcagtcatgcggttcgaccaatgactcggtggttcaaccatt 45158518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 53724187 - 53724135
Alignment:
Q  43 gagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaac 95  Q
    |||||||||| |||||||||  ||||||||||| |||||||||  ||||||||    
T  53724187 gagtcatctatccgagttatttggtttaatccaattcagtcattcggttcaac 53724135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 29 - 177
Target Start/End: Original strand, 33112161 - 33112309
Alignment:
Q  29 gttaatcttaagccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaata 128  Q
    ||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||| |||||| |||||| ||||||    
T  33112161 gttaatcctaaacagagtcatctaaccgagttatacggtttaatccagttcagtcatgcagttcaatcaatgactcagtagttcgatcattaatccaata 33112260  T
Q  129 acccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    || || ||||||||||||||||||||||||||||| |||||||||||||    
T  33112261 actcagtgcccctgccgaatcgacgaccgagccgagttttaaaactatg 33112309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 30 - 177
Target Start/End: Complemental strand, 6273276 - 6273128
Alignment:
Q  30 ttaatcttaag-ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaata 128  Q
    ||||||||||| |||||||||||||||||||||| |||||| |||| ||||||||||  ||||| |||| ||||||||||||||||||||||||||||||    
T  6273276 ttaatcttaaggccgagtcatctaaccgagttattcggtttgatccggttcagtcatacggttcgaccattgactcagtggttcgaccattaacccaata 6273177  T
Q  129 acccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    ||||| |||||||||||| |||| ||||||||||| |||||||||||||    
T  6273176 acccagtgcccctgccgagtcgatgaccgagccgagttttaaaactatg 6273128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 30 - 177
Target Start/End: Original strand, 14351893 - 14352041
Alignment:
Q  30 ttaatcttaag-ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaata 128  Q
    ||||||||||| ||| ||||| |||||||||||| |||||||||||  |||||||||| |||||||| |||||||||||||||||||||||||| || |     
T  14351893 ttaatcttaagaccgggtcatataaccgagttatccggtttaatccgattcagtcatgcggttcaactaatgactcagtggttcgaccattaactcactg 14351992  T
Q  129 acccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    | ||||||||||| |||| |||| ||||||||||| |||||||||||||    
T  14351993 atccaatgcccctaccgagtcgatgaccgagccgagttttaaaactatg 14352041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 30 - 177
Target Start/End: Original strand, 17644161 - 17644309
Alignment:
Q  30 ttaatcttaag-ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaata 128  Q
    ||||||||||| ||||||||| |||||||||||| || ||||||||  |||||||||||||||| |||| |||  |||||||||||||||| ||||| |     
T  17644161 ttaatcttaagaccgagtcatttaaccgagttatccgatttaatccgattcagtcatgtggttcgaccattgatccagtggttcgaccattgacccagtg 17644260  T
Q  129 acccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    |||| || ||||| ||||||||| ||||||| ||| |||||||||||||    
T  17644261 acccgatacccctaccgaatcgatgaccgagtcgagttttaaaactatg 17644309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 41 - 175
Target Start/End: Complemental strand, 13957066 - 13956932
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccc 140  Q
    |||||||| || | |||||||| ||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||| || | ||||| | ||      
T  13957066 ccgagtcaacttatcgagttattcggtttaatccggttcagtcatgcggttcaaccagtgactcagtggttcgaccattaactcattgacccagtaccta 13956967  T
Q  141 tgccgaatcgacgaccgagccgaattttaaaacta 175  Q
    |||||| |||| ||||||||||| |||||||||||    
T  13956966 tgccgagtcgatgaccgagccgagttttaaaacta 13956932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 177
Target Start/End: Complemental strand, 35456655 - 35456507
Alignment:
Q  30 ttaatcttaag-ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaata 128  Q
    ||||||||||| || |||||| |||||||||||| |||||||||||  |||||||||| |||||||||| ||||||||||||||||||||| | |||||     
T  35456655 ttaatcttaagaccaagtcatttaaccgagttatccggtttaatccgattcagtcatgcggttcaaccagtgactcagtggttcgaccattgatccaatg 35456556  T
Q  129 acccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    | ||| | ||||| || | | || ||||||||||| |||||||||||||    
T  35456555 aaccagtacccctcccaagttgatgaccgagccgagttttaaaactatg 35456507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 45 - 182
Target Start/End: Original strand, 32383859 - 32383996
Alignment:
Q  45 gtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgcc 144  Q
    ||||||| |||||||||| |||||||||||| |||||||||| ||||||||||||||| ||||||||| | |||||||| | | ||||| |  ||||  |    
T  32383859 gtcatcttaccgagttattcggtttaatccaattcagtcatgcggttcaaccaatgacacagtggttcaatcattaacctagtgacccagtatccctatc 32383958  T
Q  145 gaatcgacgaccgagccgaattttaaaactatgtatat 182  Q
    || |||| ||||||||||| ||||||||||||| ||||    
T  32383959 gagtcgatgaccgagccgagttttaaaactatgcatat 32383996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 177
Target Start/End: Complemental strand, 6459831 - 6459707
Alignment:
Q  53 accgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgac 152  Q
    ||||||||||  ||||||||||  |||||||||| |||||||||| |||| ||||||||||||||||||| || | ||||| | ||| |||||| |||||    
T  6459831 accgagttatctggtttaatccgattcagtcatgcggttcaaccagtgacccagtggttcgaccattaactcattgacccagtacccatgccgagtcgac 6459732  T
Q  153 gaccgagccgaattttaaaactatg 177  Q
    |||||||| || |||||||||||||    
T  6459731 gaccgagctgagttttaaaactatg 6459707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 30 - 177
Target Start/End: Complemental strand, 18942397 - 18942249
Alignment:
Q  30 ttaatcttaag-ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaata 128  Q
    ||||||||||| ||||||||| |||| ||||||| || ||||||||  |||||||||| |||||||||| | |  |||||||||||||||| ||||| |     
T  18942397 ttaatcttaagaccgagtcatttaactgagttatccgatttaatccgattcagtcatgcggttcaaccagtcatccagtggttcgaccattgacccagtg 18942298  T
Q  129 acccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    ||||  | ||||| |||| |||| ||||||||||| |||||||||||||    
T  18942297 acccggtacccctaccgagtcgatgaccgagccgagttttaaaactatg 18942249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 36745870 - 36745970
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||| | ||||| | | || |||||||||| ||||||||||| ||||||||||||    
T  36745870 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtactcccgccgaatcgatgaccgagccgagttttaaaactat 36745969  T
Q  177 g 177  Q
    |    
T  36745970 g 36745970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 38040723 - 38040623
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||| | ||||| | || | |||||||||| ||||||||||| ||||||||||||    
T  38040723 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacctccgccgaatcgatgaccgagccgagttttaaaactat 38040624  T
Q  177 g 177  Q
    |    
T  38040623 g 38040623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 29823380 - 29823257
Alignment:
Q  54 ccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacg 153  Q
    ||||||||| ||||||||||| ||||||| ||| ||||| | |||||| ||| ||||||||||||| ||| | | ||||| | |||| ||||| |||| |    
T  29823380 ccgagttatccggtttaatccggttcagttatgcggttcgatcaatgattcactggttcgaccattgacctagtgacccagtacccccgccgagtcgatg 29823281  T
Q  154 accgagccgaattttaaaactatg 177  Q
    ||||||||||||||||||||||||    
T  29823280 accgagccgaattttaaaactatg 29823257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 177
Target Start/End: Original strand, 27194774 - 27194875
Alignment:
Q  76 gttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaacta 175  Q
    ||||||||||||||||| ||||||||| ||||||||| || ||| ||||| ||||||| | |||| ||||| |||| ||||||||||| |||||||||||    
T  27194774 gttcagtcatgtggttcgaccaatgacacagtggttcaactattgacccattaacccagtaccccagccgagtcgatgaccgagccgagttttaaaacta 27194873  T
Q  176 tg 177  Q
    ||    
T  27194874 tg 27194875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 35758135 - 35758035
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||| | ||||| | || | ||||| |||| ||||||||||| ||||||||||||    
T  35758135 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccactgacccagtacctccgccgagtcgatgaccgagccgagttttaaaactat 35758036  T
Q  177 g 177  Q
    |    
T  35758035 g 35758035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 8761097 - 8761197
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||| | | ||||| | |||| ||||| |||| |||||| |||| ||||||||||||    
T  8761097 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacctattgacccagtacccccgccgagtcgatgaccgatccgagttttaaaactat 8761196  T
Q  177 g 177  Q
    |    
T  8761197 g 8761197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 177
Target Start/End: Complemental strand, 14635446 - 14635345
Alignment:
Q  76 gttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaacta 175  Q
    ||||||||||| ||||| |||||||||||| ||||||||||||| ||||| | ||||| | |||| ||||| |||| ||||||||||| | | |||||||    
T  14635446 gttcagtcatgcggttcgaccaatgactcactggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgattctgaaaacta 14635347  T
Q  176 tg 177  Q
    ||    
T  14635346 tg 14635345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 40144004 - 40143904
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||| | || || |  | | ||||| |||| ||||||||||| ||||||||||||    
T  40144004 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgactcagtttctccgccgagtcgatgaccgagccgagttttaaaactat 40143905  T
Q  177 g 177  Q
    |    
T  40143904 g 40143904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 177
Target Start/End: Complemental strand, 3752555 - 3752454
Alignment:
Q  76 gttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaacta 175  Q
    ||||||||||| ||||| |||||||||||| || |||||||||| ||||| | ||||| | |||| ||||| |||| ||||||||||| | | |||||||    
T  3752555 gttcagtcatgcggttcgaccaatgactcactgcttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgattctgaaaacta 3752456  T
Q  176 tg 177  Q
    ||    
T  3752455 tg 3752454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 389717 - 389758
Alignment:
Q  137 cccctgccgaatcgacgaccgagccgaattttaaaactatgt 178  Q
    ||||||||||||||| ||||||||||| ||||||||||||||    
T  389717 cccctgccgaatcgatgaccgagccgagttttaaaactatgt 389758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 23015145 - 23015093
Alignment:
Q  65 ggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgacca 117  Q
    |||||||| | ||||||||||| ||||||||||||||| || |||||||||||    
T  23015145 ggtttaatacggttcagtcatgcggttcaaccaatgacccaatggttcgacca 23015093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 26166212 - 26166251
Alignment:
Q  76 gttcagtcatgtggttcaaccaatgactcagtggttcgac 115  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  26166212 gttcagtcatgcggttcgaccaatgactcagtggttcgac 26166251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 17421380 - 17421303
Alignment:
Q  100 gactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    ||||||||||||||| || | || |||| | ||||| |||||  ||| |||| ||||||||||| |||||||||||||    
T  17421380 gactcagtggttcgatcaatgactcaatgatccaatacccctctcgagtcgatgaccgagccgagttttaaaactatg 17421303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 30 - 177
Target Start/End: Complemental strand, 33690306 - 33690159
Alignment:
Q  30 ttaatcttaagccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataa 129  Q
    |||||| |||||||||||||||||||||||||| |||||||||||  |||| ||||| ||||||||||| |||||||||||||||||||||||||||| |    
T  33690306 ttaatcctaagccgagtcatctaaccgagttattcggtttaatccgattcaatcatgcggttcaaccaacgactcagtggttcgaccattaacccaatga 33690207  T
Q  130 cccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    |||| | |||||||||| |||| ||||||||||| |||||||||||||    
T  33690206 cccagtacccctgccgagtcgatgaccgagccgagttttaaaactatg 33690159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 30 - 177
Target Start/End: Complemental strand, 32364269 - 32364121
Alignment:
Q  30 ttaatcttaag-ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaata 128  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||  |||||||||| |||||||||| |||| ||||||||||||||||||||||       
T  32364269 ttaatcttaagaccgagtcatctaaccgagttatccggtttaatccgattcagtcatgcggttcaaccagtgacccagtggttcgaccattaacccagcg 32364170  T
Q  129 acccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    ||||||| |||||| ||| |||| |||||||||||||||||||||||||    
T  32364169 acccaatacccctgtcgagtcgatgaccgagccgaattttaaaactatg 32364121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 178
Target Start/End: Original strand, 3014127 - 3014275
Alignment:
Q  30 ttaatcttaag-ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaata 128  Q
    ||||||||||| ||| ||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |     
T  3014127 ttaatcttaagaccgggtcatttaaccgagttattcggtttaatccggttcagtcatgtggttcaaccaatgactcagtggttcgaccattaatccagtg 3014226  T
Q  129 acccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatgt 178  Q
    ||||| | |||||||||| ||||  | |||| ||| ||||||||||||||    
T  3014227 acccagtacccctgccgagtcga-taacgagacgagttttaaaactatgt 3014275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 177
Target Start/End: Complemental strand, 49241787 - 49241642
Alignment:
Q  32 aatcttaagccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacc 131  Q
    |||| ||||||||||| ||||||||||||||  |||||||||  |||||| |||| ||||||||||| ||||| |||||||||||||||||||||| | |    
T  49241787 aatcctaagccgagtcgtctaaccgagttatttggtttaatcaggttcagccatgcggttcaaccaacgactcggtggttcgaccattaacccaatgatc 49241688  T
Q  132 caatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    || |  ||||| |||||||| |||||||||||||||||||||||||    
T  49241687 cagtatccctgtcgaatcgatgaccgagccgaattttaaaactatg 49241642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 41 - 177
Target Start/End: Complemental strand, 3252362 - 3252226
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccc 140  Q
    |||||||| ||| ||||||||| ||||||||||| ||||||||||| |||||||||| |||||||||||||| ||||||||| || | ||||| | || |    
T  3252362 ccgagtcaactagccgagttatccggtttaatccggttcagtcatgcggttcaaccagtgactcagtggttcaaccattaactcagtgacccagtacctc 3252263  T
Q  141 tgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    | |||| |||| ||||||||||| |||||||||||||    
T  3252262 taccgagtcgatgaccgagccgagttttaaaactatg 3252226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 41 - 177
Target Start/End: Complemental strand, 44410848 - 44410712
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccc 140  Q
    |||||||||||| ||||||||| ||||||||||   || ||||||| |||||||||| ||||||||||||||||||||||||||| | ||||| | |||     
T  44410848 ccgagtcatctagccgagttattcggtttaatctgatttagtcatgcggttcaaccagtgactcagtggttcgaccattaacccagtgacccagtaccct 44410749  T
Q  141 tgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    |||||| |||| |||||| |||| |||||||||||||    
T  44410748 tgccgagtcgatgaccgaaccgagttttaaaactatg 44410712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 177
Target Start/End: Original strand, 962465 - 962598
Alignment:
Q  44 agtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgc 143  Q
    ||||| || |||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||  | | ||| | | ||  |||    
T  962465 agtcaacttaccgagttattcggtttaatccggttcagtcatgtggttcaaccagtgactcagtggttcgaccattaacttattgacctagtacctatgc 962564  T
Q  144 cgaatcgacgaccgagccgaattttaaaactatg 177  Q
    ||| |||| ||||||||||| |||||||||||||    
T  962565 cgagtcgatgaccgagccgagttttaaaactatg 962598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 177
Target Start/End: Complemental strand, 18032408 - 18032287
Alignment:
Q  56 gagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgac 155  Q
    ||||||| |||||||||||| ||||||||||  ||||||||| |||||||||||||||||||||||| || | | ||| | ||| |||||| ||||||||    
T  18032408 gagttatccggtttaatccaattcagtcatgcagttcaaccagtgactcagtggttcgaccattaactcattgatccagtacccatgccgagtcgacgac 18032309  T
Q  156 cgagccgaattttaaaactatg 177  Q
    |||||||| |||||||||||||    
T  18032308 cgagccgagttttaaaactatg 18032287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 3794277 - 3794189
Alignment:
Q  45 gtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataaccca 133  Q
    |||||||||||||||||| | |||||| |  ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  3794277 gtcatctaaccgagttattcagtttaaactggttcagtcatgcggttcaaccaatgactcagtggttcgaccattaacccaatgaccca 3794189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 177
Target Start/End: Complemental strand, 42866414 - 42866278
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccc 140  Q
    |||||| |||||||||||| || ||  | | ||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||| | ||||| | ||||    
T  42866414 ccgagttatctaaccgagtcatccgagtgattccggttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccc 42866315  T
Q  141 tgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
     ||||| |||| ||||||||||| |||||||||||||    
T  42866314 cgccgagtcgatgaccgagccgagttttaaaactatg 42866278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 177
Target Start/End: Complemental strand, 24638835 - 24638702
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccc 140  Q
    |||||||| || |||||||||| ||||||||||||||||||||||| |||||||||| |||| ||   |||||||||||||| || | ||||| | |||     
T  24638835 ccgagtcaacttaccgagttattcggtttaatccagttcagtcatgcggttcaaccagtgaccca---gttcgaccattaactcactgacccactaccca 24638739  T
Q  141 tgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    |||||| |||| |||||||| || |||||||||||||    
T  24638738 tgccgagtcgatgaccgagctgagttttaaaactatg 24638702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 37034875 - 37034981
Alignment:
Q  71 atccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaa 170  Q
    |||| ||||||||||| ||||| ||||||||| |||||||||||||||| ||||| ||||||| | ||| |||||| |||| || |||||||| ||||||    
T  37034875 atccggttcagtcatgcggttcgaccaatgacccagtggttcgaccattgacccagtaacccagtacccatgccgagtcgatgatcgagccgagttttaa 37034974  T
Q  171 aactatg 177  Q
    |||||||    
T  37034975 aactatg 37034981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 177
Target Start/End: Complemental strand, 3355501 - 3355400
Alignment:
Q  76 gttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaacta 175  Q
    ||||||||||| ||||| ||||||||||||||| |||||||||| ||||| | ||||| |  ||| ||||| |||| |||||||||||||||||||||||    
T  3355501 gttcagtcatgcggttcgaccaatgactcagtgattcgaccattgacccattgacccagtatccccgccgagtcgatgaccgagccgaattttaaaacta 3355402  T
Q  176 tg 177  Q
    ||    
T  3355401 tg 3355400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 177
Target Start/End: Complemental strand, 20726107 - 20725983
Alignment:
Q  53 accgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgac 152  Q
    ||||||| ||||||||||||||  ||||||||||  ||||||||| ||| |||||||||||||||||||| || | ||||| |  || || ||| ||||     
T  20726107 accgagtcatacggtttaatccgattcagtcatgcagttcaaccagtgagtcagtggttcgaccattaactcattgacccagtatccatgtcgagtcgat 20726008  T
Q  153 gaccgagccgaattttaaaactatg 177  Q
    ||||||||||| |||||||||||||    
T  20726007 gaccgagccgagttttaaaactatg 20725983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 28234899 - 28234799
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||| | ||||| | |||| ||||| || | ||||||||||| ||||||||||||    
T  28234899 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcaatgaccgagccgagttttaaaactat 28234800  T
Q  177 g 177  Q
    |    
T  28234799 g 28234799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 44257870 - 44257770
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| ||||||||||| |||||||||||||| || || | ||||| | |||| ||||| |||| ||||||||||| ||||||||||||    
T  44257870 ttcagtcatgcggttcgaccaatgactcggtggttcgaccattgactcattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactat 44257771  T
Q  177 g 177  Q
    |    
T  44257770 g 44257770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 46545516 - 46545440
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgacca 117  Q
    |||||||||  ||||||||||| || |||||| | ||||||||||| ||||||||||||||||||||||||||||||    
T  46545516 ccgagtcatacaaccgagttatccgatttaatacggttcagtcatgcggttcaaccaatgactcagtggttcgacca 46545440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 4225048 - 4225131
Alignment:
Q  42 cgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaaccca 125  Q
    ||||| |||||||||||| || ||  || |||| ||||||| ||| |||||||||||||||||||||||||||||||| |||||    
T  4225048 cgagttatctaaccgagtcatccgagttgatccggttcagttatgcggttcaaccaatgactcagtggttcgaccattgaccca 4225131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 11191403 - 11191453
Alignment:
Q  67 tttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgacca 117  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  11191403 tttaatacggttcagtcatgtggttcaaccaatgactcagtggttcgacca 11191453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 46535277 - 46535370
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||| ||        |||| ||||| |||| ||||||||||| ||||||||||||    
T  46535277 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccagta--------cccccgccgagtcgatgaccgagccgagttttaaaactat 46535368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 177
Target Start/End: Complemental strand, 45774880 - 45774760
Alignment:
Q  53 accgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgac 152  Q
    |||||||||| ||||||||||| ||||||||||| || |||| |||||||||    | |||| |||||||||||| | ||| | | |||||||| ||||     
T  45774880 accgagttattcggtttaatccggttcagtcatgcggctcaatcaatgactc----ggtcgatcattaacccaatgatccagtacacctgccgagtcgat 45774785  T
Q  153 gaccgagccgaattttaaaactatg 177  Q
    || ||| |||| |||||||||||||    
T  45774784 gatcgaaccgagttttaaaactatg 45774760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 177
Target Start/End: Complemental strand, 50323464 - 50323330
Alignment:
Q  43 gagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctg 142  Q
    ||||||||||||||||| |  ||||||||||| ||||  ||||| ||||| |||| ||||  | ||||||||||| ||||||| | ||||| |  || |     
T  50323464 gagtcatctaaccgagtcaaccggtttaatccggttctatcatgcggttcgaccagtgacctaatggttcgaccaataacccagtgacccagtatcctta 50323365  T
Q  143 ccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    |||| ||||| ||||| |||| |||||||||||||    
T  50323364 ccgagtcgacaaccgaaccgagttttaaaactatg 50323330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 1846926 - 1846998
Alignment:
Q  105 agtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    ||||||||||||||||||||| ||||||| | || | ||||| |||| || |||||||| |||||||||||||    
T  1846926 agtggttcgaccattaacccattaacccagtacctccgccgagtcgatgatcgagccgagttttaaaactatg 1846998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 45193178 - 45193302
Alignment:
Q  53 accgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgac 152  Q
    ||||||| || ||||| |||||  ||| |||||| ||||| || ||||| ||||||||||||||| | ||||| | |||||   ||| |||||| ||||     
T  45193178 accgagtcatccggttcaatccgattcggtcatgcggttcgactaatgattcagtggttcgaccaatgacccagtgacccagcacccttgccgagtcgat 45193277  T
Q  153 gaccgagccgaattttaaaactatg 177  Q
    || |||||||| |||||||||||||    
T  45193278 gatcgagccgagttttaaaactatg 45193302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 17858006 - 17857925
Alignment:
Q  52 aaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataaccca 133  Q
    ||||||||||| |||| |||||  |||||||||||| ||||||||||||||  |||||||  |||||| || || |||||||    
T  17858006 aaccgagttatccggtataatctggttcagtcatgtagttcaaccaatgacctagtggttgaaccattgactcagtaaccca 17857925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 177
Target Start/End: Original strand, 20117850 - 20117947
Alignment:
Q  80 agtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    ||||||| |||||||||||| ||||| ||||||||||||| ||||||| || || |  |||| |||| | || |||||||||   |||||||||||||    
T  20117850 agtcatgcggttcaaccaataactcaatggttcgaccattgacccaatgactcagtatccctaccgagttgatgaccgagccagtttttaaaactatg 20117947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 50358956 - 50359009
Alignment:
Q  64 cggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgacca 117  Q
    ||||||||| || |||||||||| ||||| |||||||| |||||||||||||||    
T  50358956 cggtttaattcaattcagtcatgcggttcgaccaatgattcagtggttcgacca 50359009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 12792762 - 12792714
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaaccca 125  Q
    |||||||||| ||||| ||||||||||| |||||||||||||| |||||    
T  12792762 ttcagtcatgcggttcgaccaatgactcggtggttcgaccattgaccca 12792714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 177
Target Start/End: Original strand, 16914457 - 16914593
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccc 140  Q
    |||||| ||||||| |||| || || ||| ||||  |||||||||| |||||||  | |||| |||||||||||||||  ||||| | |||||||| | |    
T  16914457 ccgagttatctaactgagtcatccgatttgatccgattcagtcatgcggttcaattagtgacccagtggttcgaccatcgacccagtgacccaatgtctc 16914556  T
Q  141 tgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    |  ||| |||| |  |||||||| |||||||||||||    
T  16914557 tatcgagtcgatggtcgagccgagttttaaaactatg 16914593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 45484280 - 45484228
Alignment:
Q  45 gtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaacca 97  Q
    |||| ||||||||||||| |||||||||||  |||||||||| ||||||||||    
T  45484280 gtcacctaaccgagttatccggtttaatccgattcagtcatgcggttcaacca 45484228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 52585261 - 52585217
Alignment:
Q  64 cggtttaatccagttcagtcatgtggttcaaccaatgactcagtg 108  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||||    
T  52585261 cggtttaatccggttcagtcatgcggttcgaccaatgactcagtg 52585217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 151
Target Start/End: Original strand, 24984170 - 24984245
Alignment:
Q  76 gttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcga 151  Q
    ||||||||||| ||||| |||||||||||| | ||||||||||| ||||| | ||||| | |||| ||||| ||||    
T  24984170 gttcagtcatgcggttcgaccaatgactcactagttcgaccattgacccattgacccagtacccccgccgagtcga 24984245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 177
Target Start/End: Original strand, 5384835 - 5384869
Alignment:
Q  143 ccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    ||||||||| |||||||||||||||||||||||||    
T  5384835 ccgaatcgatgaccgagccgaattttaaaactatg 5384869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 19554184 - 19554234
Alignment:
Q  64 cggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcga 114  Q
    ||||||||| ||||||||||||  ||||| |||||||| ||||||||||||    
T  19554184 cggtttaattcagttcagtcatacggttcgaccaatgattcagtggttcga 19554234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 175
Target Start/End: Original strand, 40960183 - 40960313
Alignment:
Q  45 gtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgcc 144  Q
    ||||| |||||||||||| |  |||||||   ||||||||   | |||||||| ||| |||||| ||||||||||||| |  | |||||||  ||||||     
T  40960183 gtcatgtaaccgagttattcaatttaatctgattcagtcaaacgattcaaccagtgattcagtgattcgaccattaactcgttgacccaatatccctgct 40960282  T
Q  145 gaatcgacgaccgagccgaattttaaaacta 175  Q
    || |||| |||||| | ||||||||||||||    
T  40960283 gagtcgatgaccgaactgaattttaaaacta 40960313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 48303206 - 48303248
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccatt 119  Q
    |||||||||| ||||| || |||||||||||||||||||||||    
T  48303206 ttcagtcatgcggttccactaatgactcagtggttcgaccatt 48303248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 114
Target Start/End: Complemental strand, 51727157 - 51727119
Alignment:
Q  76 gttcagtcatgtggttcaaccaatgactcagtggttcga 114  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  51727157 gttcagtcatgcggttcaaccaatgactcaatggttcga 51727119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 4331948 - 4332001
Alignment:
Q  64 cggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgacca 117  Q
    |||||||||||  || ||||||| ||||||||||||||| ||||||||| ||||    
T  4331948 cggtttaatccgatttagtcatgcggttcaaccaatgacccagtggttcaacca 4332001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 17948617 - 17948674
Alignment:
Q  76 gttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataaccca 133  Q
    |||||||||||| ||||||| ||||||| |||||||  ||||||||| || |||||||    
T  17948617 gttcagtcatgtagttcaactaatgacttagtggttgaaccattaactcagtaaccca 17948674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 27415198 - 27415275
Alignment:
Q  42 cgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccatt 119  Q
    |||||||| ||||||||| || ||||| ||| |  ||||||| || ||||||||||||||  ||||||||| ||||||    
T  27415198 cgagtcatataaccgagtcattcggttcaattcgattcagtcgtgcggttcaaccaatgatccagtggttcaaccatt 27415275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 41983794 - 41983875
Alignment:
Q  96 caatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    |||||||||| |||||||||||||||| || | || || | ||| ||| || | || ||||||||||| |||||||||||||    
T  41983794 caatgactcaatggttcgaccattaactcactgactcagtacccatgctgagttgatgaccgagccgagttttaaaactatg 41983875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 177
Target Start/End: Original strand, 31986052 - 31986188
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccc 140  Q
    ||||||||| | | ||||| || ||||| |||||  ||||||  || ||||||||||||||| ||||||||| |||| | | ||| | |||||   |||     
T  31986052 ccgagtcatatgatcgagtcatccggttcaatccgattcagttgtgcggttcaaccaatgacccagtggttcaaccaatgaaccagtgacccagcaccct 31986151  T
Q  141 tgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    | |||| ||||||||||  |||| |||||||||||||    
T  31986152 taccgagtcgacgaccggtccgagttttaaaactatg 31986188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 30 - 177
Target Start/End: Complemental strand, 46170789 - 46170641
Alignment:
Q  30 ttaatcttaag-ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaata 128  Q
    ||||||||||| |||||||||||||||||||||| |||||| |||| ||||| ||||| ||||| |||| |||||||||||||||||||||||||||||     
T  46170789 ttaatcttaaggccgagtcatctaaccgagttattcggtttgatccggttcattcatgcggttcgaccattgactcagtggttcgaccattaacccaatg 46170690  T
Q  129 acccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    ||||| || ||||||||| |||| |||||||||||||||||||||||||    
T  46170689 acccagtgtccctgccgagtcgatgaccgagccgaattttaaaactatg 46170641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 181
Target Start/End: Complemental strand, 10198442 - 10198303
Alignment:
Q  42 cgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccct 141  Q
    ||||| |||||||||||| || ||  || |||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||| | | ||||| |||||    
T  10198442 cgagttatctaaccgagtcatccgagttgatccggttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccagtgatccaatacccct 10198343  T
Q  142 gccgaatcgacgaccgagccgaattttaaaactatgtata 181  Q
    ||||| |||| ||||||||||| |||||||||||| ||||    
T  10198342 gccgagtcgatgaccgagccgagttttaaaactatttata 10198303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 43 - 177
Target Start/End: Original strand, 16216974 - 16217108
Alignment:
Q  43 gagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctg 142  Q
    |||| |||||||||||| || ||  || |||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| | ||||||| ||| ||    
T  16216974 gagttatctaaccgagtcatccgagttgatccggttcagtcatgtggttcgaccaatgactcagtggttcgaccattgacccagtgacccaatacccatg 16217073  T
Q  143 ccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    | || |||| ||||||||||| |||||||||||||    
T  16217074 ctgagtcgatgaccgagccgagttttaaaactatg 16217108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 10992695 - 10992819
Alignment:
Q  53 accgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgac 152  Q
    |||||||||| |||||||||||  ||||||||||  ||||||||| ||||| |||||||||||||||||| || | ||||| | |||||||||| |||||    
T  10992695 accgagttatccggtttaatccgattcagtcatgcagttcaaccagtgacttagtggttcgaccattaactcattgacccagtacccctgccgagtcgac 10992794  T
Q  153 gaccgagccgaattttaaaactatg 177  Q
    | ||||||||| |||||||||||||    
T  10992795 ggccgagccgagttttaaaactatg 10992819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 34259253 - 34259377
Alignment:
Q  53 accgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgac 152  Q
    |||||||||| || |||||| |  |||||||||| |||||||||| |||||||||||||||||||||||| || | ||| ||| ||| |||||| |||||    
T  34259253 accgagttatccgatttaattcgattcagtcatgcggttcaaccagtgactcagtggttcgaccattaactcattgacctaatacccatgccgagtcgac 34259352  T
Q  153 gaccgagccgaattttaaaactatg 177  Q
    ||||||||||| |||||||||||||    
T  34259353 gaccgagccgagttttaaaactatg 34259377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 9822642 - 9822519
Alignment:
Q  54 ccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacg 153  Q
    ||||||||| ||||||||||| ||||||| ||| ||||| |||||||||||| ||||||||||||| || || | ||||||| |||| |||||||||| |    
T  9822642 ccgagttatccggtttaatccggttcagttatgcggttcgaccaatgactcactggttcgaccattgactcagtgacccaatacccccgccgaatcgatg 9822543  T
Q  154 accgagccgaattttaaaactatg 177  Q
    | |||||||| |||||||||||||    
T  9822542 atcgagccgagttttaaaactatg 9822519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 10724567 - 10724444
Alignment:
Q  54 ccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacg 153  Q
    ||||||||| ||||||||||| ||||||| ||| ||||| |||||||||||| ||||||||||||| || || | ||||||| |||| |||||||||| |    
T  10724567 ccgagttatccggtttaatccggttcagttatgcggttcgaccaatgactcactggttcgaccattgactcagtgacccaatacccccgccgaatcgatg 10724468  T
Q  154 accgagccgaattttaaaactatg 177  Q
    | |||||||| |||||||||||||    
T  10724467 atcgagccgagttttaaaactatg 10724444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 175
Target Start/End: Complemental strand, 5419018 - 5418899
Alignment:
Q  52 aaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcga 151  Q
    ||||||||||| |||||||||||  |||||||    |||||||||| ||||||||||||||||||||||||||| ||||||| | || ||||||| ||||    
T  5419018 aaccgagttattcggtttaatccgattcagtc----ggttcaaccagtgactcagtggttcgaccattaacccattaacccagtacctctgccgagtcga 5418923  T
Q  152 cgaccgagccgaattttaaaacta 175  Q
     ||||||||||| |||||||||||    
T  5418922 tgaccgagccgagttttaaaacta 5418899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 46 - 178
Target Start/End: Complemental strand, 31813619 - 31813487
Alignment:
Q  46 tcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccg 145  Q
    ||||||||||||||||| ||||||||| |  |||| |||||   |||||||| ||||||||||||||||||||||||||| | | ||| | |||||||||    
T  31813619 tcatctaaccgagttattcggtttaattcgattcaatcatgcaattcaaccactgactcagtggttcgaccattaacccattgaaccagtacccctgccg 31813520  T
Q  146 aatcgacgaccgagccgaattttaaaactatgt 178  Q
    | |||| ||||||| ||| ||||||||||||||    
T  31813519 agtcgatgaccgagtcgagttttaaaactatgt 31813487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 34191874 - 34192006
Alignment:
Q  45 gtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgcc 144  Q
    |||||||| |||||||||  ||||||||||  || ||||||| ||||||||||||||||||||||||||||||| |||||| | | ||| | |||||||     
T  34191874 gtcatctagccgagttatttggtttaatccgatttagtcatgcggttcaaccaatgactcagtggttcgaccatcaacccagtgatccagtacccctgca 34191973  T
Q  145 gaatcgacgaccgagccgaattttaaaactatg 177  Q
    || ||||  |||||||||| |||||||||||||    
T  34191974 gagtcgatcaccgagccgagttttaaaactatg 34192006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 177
Target Start/End: Original strand, 44605934 - 44606035
Alignment:
Q  76 gttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaacta 175  Q
    ||||||||||| ||||| ||||||||||||||||||| |||||| ||||| | ||||| | |||| ||||| |||| |||||||||||||||||||||||    
T  44605934 gttcagtcatgcggttcgaccaatgactcagtggttcaaccattgacccattgacccagtaccccggccgagtcgatgaccgagccgaattttaaaacta 44606033  T
Q  176 tg 177  Q
    ||    
T  44606034 tg 44606035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 11734245 - 11734345
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||| | ||||| | |||| ||||| |||| ||||||||||| ||||||||||||    
T  11734245 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactat 11734344  T
Q  177 g 177  Q
    |    
T  11734345 g 11734345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 33610725 - 33610645
Alignment:
Q  42 cgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaac 122  Q
    |||||||||||||||||||||  |||||||||   |||||||||| |||||||||||||||||||||||||||||||||||    
T  33610725 cgagtcatctaaccgagttatttggtttaatctgattcagtcatgcggttcaaccaatgactcagtggttcgaccattaac 33610645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 177
Target Start/End: Original strand, 45269430 - 45269553
Alignment:
Q  54 ccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacg 153  Q
    ||||||||| |||||||||||  |||||| ||| ||||| |||||||||||| ||||||||||||| ||||| | ||||| | || | ||||| |||| |    
T  45269430 ccgagttatccggtttaatccgattcagttatgcggttcgaccaatgactcactggttcgaccattgacccagtgacccagtacctccgccgagtcgatg 45269529  T
Q  154 accgagccgaattttaaaactatg 177  Q
    |||||||||| |||||||||||||    
T  45269530 accgagccgagttttaaaactatg 45269553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 177
Target Start/End: Original strand, 24096722 - 24096823
Alignment:
Q  76 gttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaacta 175  Q
    |||||| |||| ||||| |||||||||||||||||||||||||| | ||| | ||||| | ||||||||||||||| |||||| |||| |||||||||||    
T  24096722 gttcagacatgcggttcgaccaatgactcagtggttcgaccattgatccagtgacccagtacccctgccgaatcgatgaccgaaccgagttttaaaacta 24096821  T
Q  176 tg 177  Q
    ||    
T  24096822 tg 24096823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 36099691 - 36099791
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||| | ||||| | |||| ||||| || | ||||||||||| ||||||||||||    
T  36099691 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcaatgaccgagccgagttttaaaactat 36099790  T
Q  177 g 177  Q
    |    
T  36099791 g 36099791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 36858233 - 36858133
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||| | ||||| |  ||| ||||| |||| ||||||||||| ||||||||||||    
T  36858233 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtatccccgccgagtcgatgaccgagccgagttttaaaactat 36858134  T
Q  177 g 177  Q
    |    
T  36858133 g 36858133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 45 - 182
Target Start/End: Complemental strand, 17833797 - 17833661
Alignment:
Q  45 gtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgcc 144  Q
    ||||||| |||||||||| ||||||| ||  ||||||||||| || |||||||| ||||||||||||||| |||||||| ||| | ||| | |||||  |    
T  17833797 gtcatcttaccgagttatccggtttagtctggttcagtcatgcggctcaaccaacgactcagtggttcgatcattaacctaatga-ccagtacccctatc 17833699  T
Q  145 gaatcgacgaccgagccgaattttaaaactatgtatat 182  Q
    || |||| |||||  |||||||||||||||||| ||||    
T  17833698 gagtcgatgaccgtaccgaattttaaaactatggatat 17833661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 25069434 - 25069358
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgacca 117  Q
    |||||||||  ||||||||||| || |||||| | ||||||||||| ||||||||||||||||||||||||||||||    
T  25069434 ccgagtcatacaaccgagttatccgatttaatacggttcagtcatgcggttcaaccaatgactcagtggttcgacca 25069358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 29983335 - 29983235
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||| | ||||| | ||||  |||| |||| |||||| |||| ||||||||||||    
T  29983335 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccaccgagtcgatgaccgaaccgagttttaaaactat 29983236  T
Q  177 g 177  Q
    |    
T  29983235 g 29983235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 67 - 177
Target Start/End: Complemental strand, 1582265 - 1582155
Alignment:
Q  67 tttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaatt 166  Q
    ||||||||  |||||||||| ||||||| ||||||||||  |||||||||||| || || | ||||| ||| ||||| || |||| ||||||||||| ||    
T  1582265 tttaatccgattcagtcatgcggttcaatcaatgactcaacggttcgaccattgactcattgacccagtgcacctgctgagtcgatgaccgagccgagtt 1582166  T
Q  167 ttaaaactatg 177  Q
    |||||||||||    
T  1582165 ttaaaactatg 1582155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 14801974 - 14802063
Alignment:
Q  88 ggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    ||||| |||||||||||| ||||||||||||| ||||| | ||| | | |||| ||||| |||| ||||||||||| |||||||||||||    
T  14801974 ggttcgaccaatgactcaatggttcgaccattgacccattgacctagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 14802063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 15248966 - 15249055
Alignment:
Q  88 ggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    ||||| |||||||||||| ||||||||||||| ||||| | ||| | | |||| ||||| |||| ||||||||||| |||||||||||||    
T  15248966 ggttcgaccaatgactcaatggttcgaccattgacccattgacctagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 15249055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 47423545 - 47423453
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||| ||        |||| ||||||||||  |||||||||| ||||||||||||    
T  47423545 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccagta--------cccccgccgaatcgataaccgagccgagttttaaaactat 47423454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 177
Target Start/End: Original strand, 16198683 - 16198811
Alignment:
Q  48 atctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaa 147  Q
    |||||||||||| || || ||| ||||  ||||| |||| |||||||||| |||| ||||||||||| |||  ||||| | ||||||| || || ||||     
T  16198683 atctaaccgagtcatccgatttgatccgtttcagccatgcggttcaaccagtgacccagtggttcga-catcgacccagtgacccaatacctctaccgag 16198781  T
Q  148 tcgacgaccgagccgaattttaaaactatg 177  Q
    |||| | ||||||||| |||||||||||||    
T  16198782 tcgatggccgagccgagttttaaaactatg 16198811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 175
Target Start/End: Original strand, 33628226 - 33628360
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccc 140  Q
    |||||| ||| |||||||| || ||  || |||| ||| ||||||| ||||| ||||||||| || |||||| |||||| ||||| | || || | ||||    
T  33628226 ccgagttatccaaccgagtcatccgagttgatccggtttagtcatgcggttcgaccaatgacccaatggttcaaccattgacccagtgactcagtacccc 33628325  T
Q  141 tgccgaatcgacgaccgagccgaattttaaaacta 175  Q
    |||||| || | | ||||||||| |||||||||||    
T  33628326 tgccgagtcaatgtccgagccgagttttaaaacta 33628360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 30801754 - 30801677
Alignment:
Q  100 gactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    ||||||||||||| |||| | | ||||| ||||||| || || ||||||||| || |||||||| |||||||||||||    
T  30801754 gactcagtggttcaaccaatgatccaatgacccaatacctctcccgaatcgatgatcgagccgagttttaaaactatg 30801677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 25830223 - 25830139
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaaccca 125  Q
    |||||| || || ||||||||| |||||||||   |||||||||  ||||||||||| |||  ||||||||| ||||||||||||    
T  25830223 ccgagttatatagccgagttatccggtttaatttggttcagtcaaatggttcaaccagtgaaccagtggttcaaccattaaccca 25830139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 46004153 - 46004212
Alignment:
Q  51 taaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggtt 111  Q
    |||||||||||| ||||||||||| |||||||||||  |||||||||||||  ||||||||    
T  46004153 taaccgagttat-cggtttaatccggttcagtcatgcagttcaaccaatgatccagtggtt 46004212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 20623246 - 20623149
Alignment:
Q  80 agtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    ||||||| ||||||||||||||| ||||| |||||||||| || || | |||| | |||| | |||| |||| |||||  |||  |||||||||||||    
T  20623246 agtcatgcggttcaaccaatgacccagtgattcgaccattgactcagtgacccgacgcccttaccgagtcgatgaccggtccggtttttaaaactatg 20623149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 45498951 - 45498883
Alignment:
Q  56 gagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaaccca 125  Q
    ||||||| ||||||||||  ||||||||||  ||||| | |||||||||| ||||||||||||| |||||    
T  45498951 gagttatccggtttaatcg-gttcagtcattcggttcgatcaatgactcaatggttcgaccattgaccca 45498883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 30 - 168
Target Start/End: Original strand, 28761636 - 28761775
Alignment:
Q  30 ttaatcttaag-ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaata 128  Q
    ||||||||||| |||||||| ||||||||||||| |||||||||||  |||||||||| |||||||||| ||||||||||||||||||||| ||||||||    
T  28761636 ttaatcttaagaccgagtcacctaaccgagttatccggtttaatccgattcagtcatgcggttcaaccagtgactcagtggttcgaccattgacccaata 28761735  T
Q  129 acccaatgcccctgccgaatcgacgaccgagccgaatttt 168  Q
    ||||| | |||||||||| |||| ||||||||||||||||    
T  28761736 acccagtacccctgccgagtcgatgaccgagccgaatttt 28761775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 177
Target Start/End: Complemental strand, 597350 - 597234
Alignment:
Q  60 tatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgag 159  Q
    ||||||||||||||| ||||||||| | |||||||| |||||||||||||||||||||||||| |||| | ||| ||||||| |||| |||| ||| |||    
T  597350 tatacggtttaatccggttcagtcacgcggttcaac-aatgactcagtggttcgaccattaactcaatgatccagtgcccctaccgagtcgatgactgag 597252  T
Q  160 ccgaattttaaaactatg 177  Q
    ||||||||||||||||||    
T  597251 ccgaattttaaaactatg 597234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 177
Target Start/End: Original strand, 32493168 - 32493288
Alignment:
Q  57 agttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgacc 156  Q
    |||||| ||||||||| | ||||||||||| ||||||||||||||  ||||||||||||||||||| || | ||||||| ||| |||||| |||| ||||    
T  32493168 agttattcggtttaattcggttcagtcatgcggttcaaccaatgatccagtggttcgaccattaactcactgacccaatacccatgccgagtcgatgacc 32493267  T
Q  157 gagccgaattttaaaactatg 177  Q
    ||||||| |||||||||||||    
T  32493268 gagccgagttttaaaactatg 32493288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 177
Target Start/End: Complemental strand, 36834039 - 36833904
Alignment:
Q  42 cgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccct 141  Q
    ||||| ||||||| |||| || ||  || |||| ||||||||||| ||||| | |||||| ||||||||||||||||| ||||||| ||||| | |||||    
T  36834039 cgagttatctaactgagtcattcgagttgatccggttcagtcatgcggttcgatcaatgattcagtggttcgaccattgacccaatgacccagtacccct 36833940  T
Q  142 gccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    ||||| |||| ||||||||||| |||||||||||||    
T  36833939 gccgagtcgatgaccgagccgagttttaaaactatg 36833904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 177
Target Start/End: Complemental strand, 42063563 - 42063462
Alignment:
Q  76 gttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaacta 175  Q
    ||||||||||| ||||| |||||||||||||||||||||||||| ||||| | ||||| | |||| ||||| |||| ||||||||||| |||||||||||    
T  42063563 gttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaacta 42063464  T
Q  176 tg 177  Q
    ||    
T  42063463 tg 42063462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 19726716 - 19726816
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||| | ||||| | |||| ||||| |||| ||||||||||| ||||||||||||    
T  19726716 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactat 19726815  T
Q  177 g 177  Q
    |    
T  19726816 g 19726816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 178
Target Start/End: Complemental strand, 30360555 - 30360454
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| | |||||||||||||||||||||||| ||||| | ||||| | || | |||||||||| ||||||||||| ||||||||||||    
T  30360555 ttcagtcatgcggttcgaacaatgactcagtggttcgaccattgacccattgacccagtacctccgccgaatcgatgaccgagccgagttttaaaactat 30360456  T
Q  177 gt 178  Q
    ||    
T  30360455 gt 30360454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 40485556 - 40485656
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||| | ||||| | |||| ||||| || | ||||||||||| ||||||||||||    
T  40485556 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcaatgaccgagccgagttttaaaactat 40485655  T
Q  177 g 177  Q
    |    
T  40485656 g 40485656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 41726361 - 41726461
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||| | ||||| | || | ||||| |||| ||||||||||| ||||||||||||    
T  41726361 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacctccgccgagtcgatgaccgagccgagttttaaaactat 41726460  T
Q  177 g 177  Q
    |    
T  41726461 g 41726461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 41 - 177
Target Start/End: Original strand, 18656599 - 18656727
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccc 140  Q
    |||||| |||||||||||| || ||  || |||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||        ||||    
T  18656599 ccgagttatctaaccgagtcatccgagttgatccggttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccagta--------cccc 18656690  T
Q  141 tgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    |||||| |||| ||||||||||| |||||||||||||    
T  18656691 tgccgagtcgatgaccgagccgagttttaaaactatg 18656727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 13487153 - 13487252
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| | ||| | | ||| | |||| ||||| |||| ||||||||||||||||||||||||    
T  13487153 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgatccattgatccagtacccc-gccgattcgatgaccgagccgaattttaaaactat 13487251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 177
Target Start/End: Original strand, 8014901 - 8015024
Alignment:
Q  54 ccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacg 153  Q
    ||||||||| |||||||||||  |||||| ||| ||||| |||||||||||| ||||||||||||| | ||| | ||| | | |||| ||||| || | |    
T  8014901 ccgagttatccggtttaatccgattcagttatgcggttcgaccaatgactcactggttcgaccattgatccagtgacctagtacccccgccgagtcaatg 8015000  T
Q  154 accgagccgaattttaaaactatg 177  Q
    |||||||||| |||||||||||||    
T  8015001 accgagccgagttttaaaactatg 8015024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 3655954 - 3655857
Alignment:
Q  80 agtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    ||||||| ||||| |||||||||||||||||||||||||| | ||| | | ||| |  ||| ||||| |||| |||||||||||||||||||||||||    
T  3655954 agtcatgcggttcgaccaatgactcagtggttcgaccattgatccattgatccagtatccccgccgagtcgatgaccgagccgaattttaaaactatg 3655857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 31008538 - 31008638
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||| ||||| ||||| |||||||||||| ||||||||||||| ||||| | || || | |||| ||||| |||| |||||| |||||||||||||||||    
T  31008538 ttcaatcatgcggttcgaccaatgactcactggttcgaccattgacccattgactcagtacccccgccgagtcgatgaccgaaccgaattttaaaactat 31008637  T
Q  177 g 177  Q
    |    
T  31008638 g 31008638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 39375250 - 39375166
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaaccca 125  Q
    |||||| |||||||||||| || ||  || |||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  39375250 ccgagttatctaaccgagtcatccgagttgatccggttcagtcatgcggttcgaccaatgactcagtggttcgaccattgaccca 39375166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 176
Target Start/End: Original strand, 44056469 - 44056604
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccc 140  Q
    |||||| ||||||| |||| || ||  || |||| ||||||||||  ||||| |||||||||||||||||||||||||| ||||| | |  || | ||||    
T  44056469 ccgagttatctaactgagtcatccgagttgatccggttcagtcatacggttcgaccaatgactcagtggttcgaccattgacccagtgattcagtacccc 44056568  T
Q  141 tgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||| |||| || ||||| || ||||||||||||    
T  44056569 tgccgagtcgatgatcgagctgagttttaaaactat 44056604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 146
Target Start/End: Complemental strand, 6545807 - 6545714
Alignment:
Q  53 accgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccga 146  Q
    |||||||||| ||||||||||| ||||||| ||| ||||| |||||||||||  ||||||||||||| ||||| | ||||| | |||| |||||    
T  6545807 accgagttatccggtttaatccggttcagttatgcggttcgaccaatgactcgctggttcgaccattgacccagtgacccagtacccccgccga 6545714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 14910192 - 14910095
Alignment:
Q  80 agtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    ||||||| ||||| ||||||||||||||||||||| |||| ||||| | | ||| | | || ||||| |||| ||||||||||| |||||||||||||    
T  14910192 agtcatgcggttcgaccaatgactcagtggttcgatcattgacccattgatccagtactcccgccgagtcgatgaccgagccgagttttaaaactatg 14910095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 4455322 - 4455398
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgacca 117  Q
    |||||| ||||||| |||| || ||  || |||| ||||||||||| ||||| ||||||||||||||||||||||||    
T  4455322 ccgagttatctaactgagtcatccgagttgatccggttcagtcatgcggttcgaccaatgactcagtggttcgacca 4455398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 5970006 - 5970054
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaaccca 125  Q
    |||||||||| |||||||||||||||||| ||||||||||||| |||||    
T  5970006 ttcagtcatgcggttcaaccaatgactcaatggttcgaccattgaccca 5970054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 29867852 - 29867772
Alignment:
Q  53 accgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataaccca 133  Q
    ||||||| || || |||||||| ||||||||||| |||||||||| ||||||| |||||| |||| | ||||||| |||||    
T  29867852 accgagtcatccgatttaatccggttcagtcatgcggttcaaccagtgactcactggttcaaccaatgacccaatgaccca 29867772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 36658607 - 36658559
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaaccca 125  Q
    |||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  36658607 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgaccca 36658559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 26403638 - 26403727
Alignment:
Q  88 ggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    |||||||||| |||||||||||||| ||||||||| |||| || || | |||||  ||| |||| |||| |||||| |||||||| ||||    
T  26403638 ggttcaaccagtgactcagtggttcaaccattaactcaatgacacagtacccctatcgagtcgatgaccaagccgagttttaaaattatg 26403727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 20821791 - 20821847
Alignment:
Q  69 taatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaaccca 125  Q
    |||||| ||||||| ||| ||||||||   |||||||||||||||||||||||||||    
T  20821791 taatccggttcagttatgcggttcaacaggtgactcagtggttcgaccattaaccca 20821847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 45219507 - 45219571
Alignment:
Q  53 accgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgacca 117  Q
    ||||||| || |||||||||||  |||||||||| |||||||||| |||| || |||||||||||    
T  45219507 accgagtcatccggtttaatccgattcagtcatgcggttcaaccattgacccaatggttcgacca 45219571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 31893201 - 31893248
Alignment:
Q  69 taatccagttcagtcatgtggttcaaccaatgactcagtggttcgacc 116  Q
    |||||| ||||||||||| |||||||||| ||||||||||||| ||||    
T  31893201 taatccggttcagtcatgcggttcaaccagtgactcagtggtttgacc 31893248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 30 - 177
Target Start/End: Original strand, 16106670 - 16106818
Alignment:
Q  30 ttaatcttaagc-cgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaata 128  Q
    |||||||||||  |||||||||||||||||||||  ||||||||||  |||||||||| |||||||||| ||||||||||||||||||||||||||| |     
T  16106670 ttaatcttaagatcgagtcatctaaccgagttatctggtttaatccgattcagtcatgcggttcaaccagtgactcagtggttcgaccattaacccagtg 16106769  T
Q  129 acccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    ||||||| | | |||||| |||| ||||||||||| |||||||||||||    
T  16106770 acccaatactcttgccgagtcgatgaccgagccgagttttaaaactatg 16106818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 177
Target Start/End: Original strand, 6065481 - 6065614
Alignment:
Q  44 agtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgc 143  Q
    ||||||| ||||||||||| ||||||||||   |||||||||| ||||||||||||||| |||||||||||||||||||||| | || || | |||||||    
T  6065481 agtcatcaaaccgagttattcggtttaatctgattcagtcatgcggttcaaccaatgacccagtggttcgaccattaacccagtgactcagtacccctgc 6065580  T
Q  144 cgaatcgacgaccgagccgaattttaaaactatg 177  Q
    |||||||| |||||  |||| |||||||||||||    
T  6065581 cgaatcgatgaccggaccgagttttaaaactatg 6065614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 41 - 177
Target Start/End: Original strand, 35305263 - 35305399
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccc 140  Q
    |||||| |||||||||||| || ||  || |||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||| | ||||| | ||||    
T  35305263 ccgagttatctaaccgagtcatccgagttgatccggttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccagtgacccagtacccc 35305362  T
Q  141 tgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    |||||| |||| ||||||||||| |||||||||||||    
T  35305363 tgccgagtcgatgaccgagccgagttttaaaactatg 35305399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 177
Target Start/End: Original strand, 21800638 - 21800786
Alignment:
Q  30 ttaatcttaag-ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaata 128  Q
    ||||||||||| ||||||||| |||||||||||| || ||||||||  ||||||||||  ||||||||| |||| ||||| |||||||||| ||||| |     
T  21800638 ttaatcttaagaccgagtcatttaaccgagttatccgatttaatccgattcagtcatgcagttcaaccagtgacccagtgattcgaccattgacccagtg 21800737  T
Q  129 acccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    ||||  | ||||| |||| |||| ||||||||||| |||||||||||||    
T  21800738 acccggtacccctaccgagtcgatgaccgagccgagttttaaaactatg 21800786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 177
Target Start/End: Complemental strand, 37484539 - 37484403
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccc 140  Q
    ||||||||||||||||||| || ||||||||||||||||  ||||| ||||| |||| ||||||| |||||||| || ||||||||| ||||| |  ||     
T  37484539 ccgagtcatctaaccgagtcatccggtttaatccagttccatcatgcggttcgaccagtgactcaatggttcgatcaataacccaatgacccagtatcct 37484440  T
Q  141 tgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    | |||| ||||| |||||||||| |||||||||||||    
T  37484439 taccgagtcgacaaccgagccgagttttaaaactatg 37484403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 19882062 - 19881939
Alignment:
Q  54 ccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacg 153  Q
    ||||||||| ||||||||||| ||||||| ||| ||||| |||||||||||| ||||||||||||| ||| | | ||||| | |||| ||||| || | |    
T  19882062 ccgagttatccggtttaatccggttcagttatgcggttcgaccaatgactcactggttcgaccattgaccaagtgacccagtacccccgccgagtcaatg 19881963  T
Q  154 accgagccgaattttaaaactatg 177  Q
    |||||||||| |||||||||||||    
T  19881962 accgagccgagttttaaaactatg 19881939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 177
Target Start/End: Original strand, 32878694 - 32878817
Alignment:
Q  54 ccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacg 153  Q
    ||||||||| ||||||||| |  |||||| ||| ||||| |||||||||||| ||||||||||||| |||||   ||||| | |||| ||||| ||||||    
T  32878694 ccgagttatccggtttaattcgattcagttatgcggttcgaccaatgactcattggttcgaccattgacccagggacccagtacccccgccgagtcgacg 32878793  T
Q  154 accgagccgaattttaaaactatg 177  Q
    |||||||||| |||||||||||||    
T  32878794 accgagccgagttttaaaactatg 32878817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 177
Target Start/End: Original strand, 10810536 - 10810661
Alignment:
Q  52 aaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcga 151  Q
    ||||||||||| ||||||||||   |||||||||| ||||||||| ||||| ||||||||||| |||||||||| | ||||| | ||  |||||| ||||    
T  10810536 aaccgagttattcggtttaatctgattcagtcatgcggttcaaccgatgacccagtggttcgatcattaacccattgacccagtaccgttgccgagtcga 10810635  T
Q  152 cgaccgagccgaattttaaaactatg 177  Q
     || |||||||| |||||||||||||    
T  10810636 tgatcgagccgagttttaaaactatg 10810661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 24128853 - 24128753
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||| ||||||||||||||||| ||||| | ||||| | |||| ||||| |||| ||||||||||| ||||||||||||    
T  24128853 ttcagtcatgcggttcgaccaatgattcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactat 24128754  T
Q  177 g 177  Q
    |    
T  24128753 g 24128753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 71 - 177
Target Start/End: Complemental strand, 3988811 - 3988705
Alignment:
Q  71 atccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaa 170  Q
    |||| ||||||||||| ||||||||||||||| || || |||||||||| ||||||| ||||| |  ||||||||| || | ||||||||||| ||||||    
T  3988811 atccggttcagtcatgcggttcaaccaatgacccaatgattcgaccattgacccaatgacccagtatccctgccgagtcaatgaccgagccgagttttaa 3988712  T
Q  171 aactatg 177  Q
    |||||||    
T  3988711 aactatg 3988705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 17513117 - 17513020
Alignment:
Q  80 agtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    |||||||  |||| |||||||||||||||||||||||||| ||||| | ||||| | |||| ||||| |||| ||||||||||| |||||||||||||    
T  17513117 agtcatgcagttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 17513020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 16457751 - 16457851
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||| ||| | |||||||| ||| |||||||||| ||||||||| || | ||||||| ||| ||||||||||| ||||||||||| ||||||||||||    
T  16457751 ttcagttatgcgattcaaccagtgattcagtggttccaccattaactcattgacccaatacccatgccgaatcgatgaccgagccgagttttaaaactat 16457850  T
Q  177 g 177  Q
    |    
T  16457851 g 16457851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 23293189 - 23293289
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||| | ||||| | |||  ||||| || | ||||||||||| ||||||||||||    
T  23293189 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattcacccattgacccagtaccctcgccgagtcaatgaccgagccgagttttaaaactat 23293288  T
Q  177 g 177  Q
    |    
T  23293289 g 23293289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 39061932 - 39062024
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||||||        |||| ||||| |||| ||||||||||||||||||||||||    
T  39061932 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccaata--------cccccgccgagtcgatgaccgagccgaattttaaaactat 39062023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 176
Target Start/End: Complemental strand, 31900505 - 31900414
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||| ||        |||| |||||||||| ||||||||||||||||||||||||    
T  31900505 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccagta--------cccccgccgaatcgatgaccgagccgaattttaaaactat 31900414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 177
Target Start/End: Original strand, 12365511 - 12365636
Alignment:
Q  52 aaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcga 151  Q
    |||||||| || |||||||  || ||||||||||| |||||||||| |||| |||||||||||||| ||| ||| | ||||| | |||   |||||||||    
T  12365511 aaccgagtcatccggtttatcccggttcagtcatgcggttcaaccagtgacccagtggttcgaccaataaaccagtgacccagtaccctaaccgaatcga 12365610  T
Q  152 cgaccgagccgaattttaaaactatg 177  Q
    ||||||  |||| |||||||||||||    
T  12365611 cgaccggtccgagttttaaaactatg 12365636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 7153536 - 7153437
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||  || | ||||| | |||| | ||| |||| ||||||||||| ||||||||||||    
T  7153536 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattaa-tcattgacccagtacccccgtcgagtcgatgaccgagccgagttttaaaactat 7153438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 37314945 - 37315037
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||| ||        |||| |||||||||| ||||||||||| ||||||||||||    
T  37314945 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccagta--------cccccgccgaatcgatgaccgagccgagttttaaaactat 37315036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 178
Target Start/End: Original strand, 39761825 - 39761963
Alignment:
Q  40 gccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgccc 139  Q
    ||||||| ||||||||||||||| ||  || ||||| ||  || |||   ||| ||||||||||||||||||||||||||| |||||| ||| ||| |      
T  39761825 gccgagttatctaaccgagttatccgaattgatccaattttgtaatgcatttcgaccaatgactcagtggttcgaccattatcccaatgacctaatacgt 39761924  T
Q  140 ctgccgaatcgacgaccgagccgaattttaaaactatgt 178  Q
    ||  |||||| | |||||| |||||||||||||||||||    
T  39761925 ctatcgaatcaatgaccgaaccgaattttaaaactatgt 39761963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 178
Target Start/End: Complemental strand, 39678404 - 39678303
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| ||||||||||||||| |||||||||| || || | ||||| | || ||||||| |||| ||| ||  ||||||||||||||||    
T  39678404 ttcagtcatgcggttcgaccaatgactcagtgattcgaccattgactcattgacccagtacctctgccgagtcgatgacagaatcgaattttaaaactat 39678305  T
Q  177 gt 178  Q
    ||    
T  39678304 gt 39678303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 26606663 - 26606583
Alignment:
Q  45 gtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaaccca 125  Q
    |||||||||||||||||| |||||||||    ||||||||||  ||||||||| | |||||||||||||||| ||||||||    
T  26606663 gtcatctaaccgagttattcggtttaatttgattcagtcatgcagttcaaccattaactcagtggttcgaccgttaaccca 26606583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 177
Target Start/End: Complemental strand, 27905758 - 27905622
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccc 140  Q
    |||||| |||||||||||| || || ||| |||   |||||||||  ||||||||| ||||| |||||||||||||||  ||||| | |||||||||| |    
T  27905758 ccgagttatctaaccgagtcatccgatttgatctgattcagtcatacggttcaaccgatgacccagtggttcgaccatctacccagtgacccaatgcctc 27905659  T
Q  141 tgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    | |||| |||| | || |||||  |||||||||||||    
T  27905658 taccgagtcgatggccaagccgtgttttaaaactatg 27905622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 23251092 - 23250969
Alignment:
Q  54 ccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacg 153  Q
    ||||||||| |||||||||||  |||||| ||| ||||| |||||||||||  ||||||||||||| | ||| | ||||| | |||| | ||| |||| |    
T  23251092 ccgagttatccggtttaatccgattcagttatgcggttcgaccaatgactcgctggttcgaccattgatccagtgacccagtacccccgtcgagtcgatg 23250993  T
Q  154 accgagccgaattttaaaactatg 177  Q
    || |||| || |||||||||||||    
T  23250992 actgagctgagttttaaaactatg 23250969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 29523894 - 29523986
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||| ||        |||| ||||| |||| ||||||||||| ||||||||||||    
T  29523894 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccagta--------cccccgccgagtcgatgaccgagccgagttttaaaactat 29523985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 178
Target Start/End: Complemental strand, 29781538 - 29781415
Alignment:
Q  55 cgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacga 154  Q
    ||||| || |||||||||||  ||||| |||| |||||||||| |||| |  || |||||||||  || |||| | |||||| | ||||||| |||| ||    
T  29781538 cgagtcatccggtttaatccgattcagccatgcggttcaaccagtgacccgatgattcgaccatcgactcaattatccaatgtctctgccgagtcgaaga 29781439  T
Q  155 ccgagccgaattttaaaactatgt 178  Q
    ||||||||| ||||||||||||||    
T  29781438 ccgagccgagttttaaaactatgt 29781415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 14885392 - 14885340
Alignment:
Q  76 gttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaata 128  Q
    ||||||||||| ||||| || ||||||||||||||||||||||| ||||||||    
T  14885392 gttcagtcatgcggttcgactaatgactcagtggttcgaccattgacccaata 14885340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 18540753 - 18540658
Alignment:
Q  82 tcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    ||||||||||| |||   |||||||||||||||||| | ||||||| | ||| | ||||| |||| |||| || |||||||| |||||||||||||    
T  18540753 tcatgtggttcgacctgcgactcagtggttcgaccagtgacccaatgatccagtaccccttccgagtcgatgatcgagccgagttttaaaactatg 18540658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 20907196 - 20907126
Alignment:
Q  52 aaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaac 122  Q
    |||||||| || || |||| |||||| |||||||| ||||| |||||||||||| ||||||||||| ||||    
T  20907196 aaccgagtcatccgatttattccagtccagtcatgcggttctaccaatgactcaatggttcgaccagtaac 20907126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 22315188 - 22315294
Alignment:
Q  71 atccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaa 170  Q
    |||| ||||| |||||||||||||||| ||||| ||||||||||||||| || |  | ||| | | | |||||||| || | ||||||| ||| ||||||    
T  22315188 atccggttcaatcatgtggttcaaccagtgactgagtggttcgaccattgactcggtgacctagtacacctgccgagtcaatgaccgagacgagttttaa 22315287  T
Q  171 aactatg 177  Q
    |||||||    
T  22315288 aactatg 22315294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 24934963 - 24934893
Alignment:
Q  52 aaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaac 122  Q
    ||||||||||| || |||||| ||||||||| ||| ||||||||||||||  ||||||||| |||| ||||    
T  24934963 aaccgagttatccgatttaatacagttcagttatgcggttcaaccaatgatccagtggttcaaccaataac 24934893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 25683655 - 25683585
Alignment:
Q  52 aaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaac 122  Q
    ||||||||||| || |||||| ||||||||| ||| ||||||||||||||  ||||||||| |||| ||||    
T  25683655 aaccgagttatccgatttaatacagttcagttatgcggttcaaccaatgatccagtggttcaaccaataac 25683585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 29743743 - 29743785
Alignment:
Q  180 tattcaattcagaagtgcaaaaacaagcaaagaacattgtaat 222  Q
    ||||||||||||| ||| |||||||||||||||||||||||||    
T  29743743 tattcaattcagacgtggaaaaacaagcaaagaacattgtaat 29743785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 37255988 - 37256088
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||| ||||| ||||||||||| |||||| ||||||||||||| | ||| | | ||| |||| || |||| |||| |||||| |||  ||||||||||||    
T  37255988 ttcaatcatgcggttcaaccaacgactcaatggttcgaccattgaaccattgatccagtgcctctaccgagtcgatgaccgaaccggtttttaaaactat 37256087  T
Q  177 g 177  Q
    |    
T  37256088 g 37256088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 177
Target Start/End: Complemental strand, 40404447 - 40404311
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccc 140  Q
    |||||| || || ||||||||| || || |||||  ||| |||||| ||||| |||| |||  |||||||||||||| ||| ||||| || || |  ||     
T  40404447 ccgagtgatatatccgagttatccgattcaatccgattctgtcatgcggttcgaccagtgatccagtggttcgaccaataatccaatgactcactaacct 40404348  T
Q  141 tgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    | |||| |||| |||||| |||| |||||||||||||    
T  40404347 taccgagtcgatgaccgatccgatttttaaaactatg 40404311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 43869924 - 43869988
Alignment:
Q  53 accgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgacca 117  Q
    ||||||| || ||||||| |||  |||||||||| |||||||||| |||| || |||||||||||    
T  43869924 accgagtcatccggtttagtccgattcagtcatgcggttcaaccagtgacccaatggttcgacca 43869988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 177
Target Start/End: Original strand, 19916387 - 19916534
Alignment:
Q  30 ttaatcttaagccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataa 129  Q
    |||||| |||||||||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||| || ||||||||||||||||||| ||||| |    
T  19916387 ttaatcctaagccgagtcatctaaccgagttattcagtttaattcagttcagtcatgcggttcaaccaacgattcagtggttcgaccattaatccaatga 19916486  T
Q  130 cccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    |||| | || |||| |  |||| ||||||||||| |||||||||||||    
T  19916487 cccagtacctctgctgtgtcgatgaccgagccgagttttaaaactatg 19916534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 30 - 177
Target Start/End: Complemental strand, 4414563 - 4414415
Alignment:
Q  30 ttaatcttaag-ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaata 128  Q
    ||||||||||| ||||||||| ||| |||||||| |||||||||||  |||||||||| |||||||| | ||||||||||||||||||||| ||||| |     
T  4414563 ttaatcttaagaccgagtcatttaatcgagttatccggtttaatccgattcagtcatgcggttcaacaagtgactcagtggttcgaccattgacccagtg 4414464  T
Q  129 acccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    ||||| | |||||||||| |||| ||||||||||| |||||||||||||    
T  4414463 acccagtacccctgccgagtcgatgaccgagccgagttttaaaactatg 4414415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 41 - 180
Target Start/End: Complemental strand, 8132927 - 8132788
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccc 140  Q
    |||||||| ||| ||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||| || | ||||| | || |    
T  8132927 ccgagtcaactagccgagttatccggtttaatccggttcagtcatgcggttcaaccaatgactcagtggttcaaccattaactcagtgacccagtacctc 8132828  T
Q  141 tgccgaatcgacgaccgagccgaattttaaaactatgtat 180  Q
    | |||| |||| ||||||||||| ||||||||||||||||    
T  8132827 taccgagtcgatgaccgagccgagttttaaaactatgtat 8132788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 177
Target Start/End: Original strand, 25232638 - 25232774
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccc 140  Q
    |||||| |||||||||||  || ||  || |||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||| | ||||| | ||||    
T  25232638 ccgagttatctaaccgagccatccgagttgatccggttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccc 25232737  T
Q  141 tgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    |||||| |||| ||||||||||| |||||||||||||    
T  25232738 tgccgagtcgatgaccgagccgagttttaaaactatg 25232774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 177
Target Start/End: Original strand, 6354926 - 6355073
Alignment:
Q  31 taatcttaagcc-gagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataa 129  Q
    |||||||||| | |||||||||||||| ||||| ||||||||||| ||||||||||| |||||||| | ||||||| ||||||||||||||||||| | |    
T  6354926 taatcttaaggctgagtcatctaaccgggttattcggtttaatccggttcagtcatgcggttcaactattgactcaatggttcgaccattaacccagtga 6355025  T
Q  130 cccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    | ||   || ||  ||| |||| ||||||||||| |||||||||||||    
T  6355026 ctcagaacctctatcgagtcgatgaccgagccgagttttaaaactatg 6355073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 41 - 177
Target Start/End: Original strand, 1936474 - 1936610
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccc 140  Q
    |||||| |||||||||||  || ||  || |||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||| | ||||| | ||||    
T  1936474 ccgagttatctaaccgagccatccgagttgatccggttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccc 1936573  T
Q  141 tgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    |||||| |||| ||||||| ||  |||||||||||||    
T  1936574 tgccgagtcgatgaccgagtcgggttttaaaactatg 1936610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 23611540 - 23611640
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||| |  ||| ||||| |||| |||||| |||| ||||||||||||    
T  23611540 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattaacccagtatccccgccgagtcgatgaccgaaccgagttttaaaactat 23611639  T
Q  177 g 177  Q
    |    
T  23611640 g 23611640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 177
Target Start/End: Original strand, 43245683 - 43245819
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccc 140  Q
    ||||||||| | ||||||||||  | ||| |||| ||||||| ||| |||||||||| | ||||| ||||||||||||||||||| | ||||||| ||||    
T  43245683 ccgagtcatatgaccgagttatttgatttgatccggttcagttatgcggttcaaccagtaactcaatggttcgaccattaacccagtgacccaatacccc 43245782  T
Q  141 tgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    || ||| ||||   ||||| |||||||||||||||||    
T  43245783 tgtcgagtcgatagccgagtcgaattttaaaactatg 43245819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 177
Target Start/End: Complemental strand, 54822175 - 54822047
Alignment:
Q  49 tctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaat 148  Q
    |||| ||||||||| || |||||||   |||||||||| |||||||||| |||||||||||||||| |||| || || | ||||| | | |||||||| |    
T  54822175 tctacccgagttatccgatttaatctgtttcagtcatgcggttcaaccagtgactcagtggttcgatcattgactcagtgacccagtacacctgccgagt 54822076  T
Q  149 cgacgaccgagccgaattttaaaactatg 177  Q
    ||| ||||||||||| |||||||||||||    
T  54822075 cgatgaccgagccgagttttaaaactatg 54822047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 121
Target Start/End: Complemental strand, 7362267 - 7362176
Alignment:
Q  30 ttaatcttaagccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaa 121  Q
    ||||||||| | ||| |||||||| |||||||| |||||||||| |||||| ||||| |||||||||||||| | |||||||||||||||||    
T  7362267 ttaatcttatgtcgaatcatctaatcgagttattcggtttaatctagttcaatcatgcggttcaaccaatgatttagtggttcgaccattaa 7362176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 11792484 - 11792384
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||| ||||||||||||||||| ||||| | ||||| |  ||| ||||| |||| ||||||||||| ||||||||||||    
T  11792484 ttcagtcatgcggttcgaccaatgattcagtggttcgaccattgacccattgacccagtatccccgccgagtcgatgaccgagccgagttttaaaactat 11792385  T
Q  177 g 177  Q
    |    
T  11792384 g 11792384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 178
Target Start/End: Complemental strand, 24394196 - 24394072
Alignment:
Q  54 ccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacg 153  Q
    ||||||||| || |||||||  ||||||| ||||| ||| |||||| ||||| ||||||||||||| ||||| | ||||| | |||| ||||| |||| |    
T  24394196 ccgagttatccgatttaatctggttcagttatgtgattcgaccaataactcactggttcgaccattgacccagtgacccagtacccccgccgagtcgatg 24394097  T
Q  154 accgagccgaattttaaaactatgt 178  Q
    |||||||||| |||||||| |||||    
T  24394096 accgagccgagttttaaaattatgt 24394072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 177
Target Start/End: Complemental strand, 55675556 - 55675420
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccc 140  Q
    |||||| |||||||||||  || ||  ||||||| ||| |||| || ||||| ||||||||||||||| |||||||||| ||| | | ||||| | ||||    
T  55675556 ccgagttatctaaccgagccattcgagttaatccggtttagtcttgcggttcgaccaatgactcagtgattcgaccattgacctattgacccagtacccc 55675457  T
Q  141 tgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    || ||| |||| ||||||||||| |||||||||||||    
T  55675456 tgtcgagtcgatgaccgagccgagttttaaaactatg 55675420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 178
Target Start/End: Original strand, 12704623 - 12704760
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccc 140  Q
    |||||| |||||||||||| || ||  || |||| ||||||| ||| ||||| | |||||||||||||||||||||||| ||  | | ||||| | |||     
T  12704623 ccgagttatctaaccgagtcatccgagttgatccggttcagtaatgcggttcgatcaatgactcagtggttcgaccattgacttagtgacccagtaccca 12704722  T
Q  141 tgccgaatcgacgaccgagccgaattttaaaactatgt 178  Q
    |||| | |||| ||||||||||| ||||||||||||||    
T  12704723 tgcctagtcgatgaccgagccgagttttaaaactatgt 12704760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 177
Target Start/End: Original strand, 26203644 - 26203780
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccc 140  Q
    |||||| || ||| ||||| || |||||||||||  ||||||||||  ||||||||||||||||  ||||||||||||  || || | ||||| |||| |    
T  26203644 ccgagttatttaatcgagtcatccggtttaatccgattcagtcatgcagttcaaccaatgactcgatggttcgaccatccactcagtgacccagtgcctc 26203743  T
Q  141 tgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    || ||| |||| || |||||||| |||||||||||||    
T  26203744 tgtcgagtcgatgatcgagccgagttttaaaactatg 26203780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 24776140 - 24776274
Alignment:
Q  48 atctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaa 147  Q
    |||||||||||| || || ||| ||||  ||||| ||||  |||||||||||||  |||||||||||||||  ||||| | ||||||| || || ||||     
T  24776140 atctaaccgagtcatccgatttgatccgattcagccatgcagttcaaccaatgatccagtggttcgaccatcgacccagtgacccaatacctctaccgag 24776239  T
Q  148 tcgacgaccgagccgaattttaaaactatgtatat 182  Q
    |||| | ||||||||| ||||||||||||| ||||    
T  24776240 tcgatggccgagccgagttttaaaactatgcatat 24776274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 28359678 - 28359783
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||||| ||||||  || |||||||| |||| ||||| | ||||||| || ||||||| || | ||||||||||| ||||||||||||    
T  28359678 ttcagtcatgcggttcaatcaatgatccaatggttcgatcattgacccagtgacccaatacctctgccgagtcaatgaccgagccgagttttaaaactat 28359777  T
Q  177 gtatat 182  Q
    | ||||    
T  28359778 gaatat 28359783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 2039211 - 2039143
Alignment:
Q  48 atctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgacc 116  Q
    ||||||||| || || || |||||||| ||||||| ||| |||||||||| ||||||||||||||||||    
T  2039211 atctaaccgggtcatccgatttaatccggttcagtaatgaggttcaaccagtgactcagtggttcgacc 2039143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 38519397 - 38519329
Alignment:
Q  67 tttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaat 135  Q
    |||||||  ||| ||||||| |||||||||| ||||||| ||||||||||||||||||| | |||||||    
T  38519397 tttaatctggttaagtcatgcggttcaaccagtgactcaatggttcgaccattaacccagtgacccaat 38519329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 18707455 - 18707525
Alignment:
Q  42 cgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttc 112  Q
    |||||||| ||||||||| || ||||| |||||  ||||||| || ||||||||||||||| |||||||||    
T  18707455 cgagtcatataaccgagtcattcggttcaatccgattcagtcgtgcggttcaaccaatgacacagtggttc 18707525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 178
Target Start/End: Complemental strand, 44352216 - 44352086
Alignment:
Q  48 atctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaa 147  Q
    |||| ||||||| || |||||| |||   |||||||||| |||||||||| |||| || ||||||||||||  || || | ||||| | ||  ||||||     
T  44352216 atcttaccgagtcatccggtttgatctgattcagtcatgcggttcaaccagtgacccaatggttcgaccatcgactcagtgacccagtacctatgccgag 44352117  T
Q  148 tcgacgaccgagccgaattttaaaactatgt 178  Q
    |||| |||||| |||| ||||||||||||||    
T  44352116 tcgatgaccgaaccgagttttaaaactatgt 44352086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 7648123 - 7648075
Alignment:
Q  76 gttcagtcatgtggttcaaccaatgactcagtggttcgaccattaaccc 124  Q
    ||||||||||| ||||| |||||||||||| ||||||||||||| ||||    
T  7648123 gttcagtcatgcggttcgaccaatgactcactggttcgaccattgaccc 7648075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 55497553 - 55497505
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaaccca 125  Q
    |||||||||| ||||| | |||||||||||||||||||||||| |||||    
T  55497553 ttcagtcatgcggttcgatcaatgactcagtggttcgaccattgaccca 55497505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 127
Target Start/End: Complemental strand, 38465304 - 38465218
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaat 127  Q
    ||||||||| ||||||||  || || || |||| | |||||||||| ||||| ||||||||||||||| ||| |||| | |||||||    
T  38465304 ccgagtcatataaccgagccattcgattcaatctaattcagtcatgcggttcgaccaatgactcagtgattcaaccaatgacccaat 38465218  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 13428781 - 13428830
Alignment:
Q  76 gttcagtcatgtggttcaaccaatgactcagtggttcgaccattaaccca 125  Q
    ||||||| ||| |||||||  | |||||||||||||||||||||||||||    
T  13428781 gttcagttatgcggttcaattagtgactcagtggttcgaccattaaccca 13428830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 293529 - 293593
Alignment:
Q  53 accgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgacca 117  Q
    ||||||| || ||||||| |||  |||||||||| |||||||||| |||| || |||||||||||    
T  293529 accgagtcatccggtttagtccgattcagtcatgcggttcaaccagtgacccaatggttcgacca 293593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 181
Target Start/End: Complemental strand, 2859507 - 2859415
Alignment:
Q  89 gttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatgtata 181  Q
    |||| |||| |||| |||||||||||||||| ||||| | ||||||| ||| | |||| ||||  ||||  | || |||||||||||||||||    
T  2859507 gttcgaccagtgacccagtggttcgaccattgacccagtgacccaatacccttaccgagtcgatcaccggtctgagttttaaaactatgtata 2859415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 177
Target Start/End: Complemental strand, 25510623 - 25510487
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccc 140  Q
    ||||||||| | | ||||| || ||||| |||||  ||||||  || ||||||||||||||| ||||||||| |||| | | ||| | |||||   |||     
T  25510623 ccgagtcatatgatcgagtcatccggttcaatccgattcagttgtgcggttcaaccaatgacccagtggttcaaccaatgaaccagtgacccagcaccct 25510524  T
Q  141 tgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    | |||| ||||||||||  |||| |||||||||||||    
T  25510523 taccgagtcgacgaccggtccgagttttaaaactatg 25510487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 180
Target Start/End: Complemental strand, 34856104 - 34856004
Alignment:
Q  80 agtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatgta 179  Q
    ||||||| ||||||||||||||  |||||||||||||||| || || | |||| | |||| | |||| |||| ||| |  |||  |||||||||||||||    
T  34856104 agtcatgcggttcaaccaatgatccagtggttcgaccattgactcagtgacccgacgcccttaccgagtcgatgactggtccggtttttaaaactatgta 34856005  T
Q  180 t 180  Q
    |    
T  34856004 t 34856004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 177
Target Start/End: Complemental strand, 6817425 - 6817290
Alignment:
Q  42 cgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccct 141  Q
    ||||||||||| |||| |||| |||||||||||  || ||| ||| |||||||||| ||||||||||||||||||||||||||||| ||||| | ||| |    
T  6817425 cgagtcatctagccgaattattcggtttaatccgatttagttatgcggttcaaccagtgactcagtggttcgaccattaacccaatgacccagtaccctt 6817326  T
Q  142 gccgaatcgacgaccgagccgaattttaaaactatg 177  Q
     |||| |||| ||||||||||| |||||||||||||    
T  6817325 accgagtcgatgaccgagccgagttttaaaactatg 6817290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 23595823 - 23595691
Alignment:
Q  45 gtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgcc 144  Q
    |||||||| |||||||||  ||||||||||  || | ||||| ||||||||||||||||||||||||||||||| |||||| | ||||| | ||||||||    
T  23595823 gtcatctagccgagttatttggtttaatccgatttaatcatgcggttcaaccaatgactcagtggttcgaccatcaacccagtgacccagtacccctgcc 23595724  T
Q  145 gaatcgacgaccgagccgaattttaaaactatg 177  Q
    || ||||  |||||||||| |||||||||||||    
T  23595723 gagtcgatcaccgagccgagttttaaaactatg 23595691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 24068200 - 24068300
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||| | ||||||| |||| ||||| |||| ||||||||||| ||||||||||||    
T  24068200 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccaatacccccgccgagtcgatgaccgagccgagttttaaaactat 24068299  T
Q  177 g 177  Q
    |    
T  24068300 g 24068300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 177
Target Start/End: Original strand, 29419724 - 29419863
Alignment:
Q  30 ttaatcttaag-ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaata 128  Q
    ||||||||||| |||||||| ||||||||||||| || ||||||||  |||||||||| |||||||||| ||||||||||||| ||||||| ||||| ||    
T  29419724 ttaatcttaagaccgagtcacctaaccgagttatccg-tttaatccgattcagtcatgcggttcaaccagtgactcagtggtttgaccattgacccagta 29419822  T
Q  129 acccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
            |||||||||| |||| ||||||||||| |||||||||||||    
T  29419823 --------cccctgccgagtcgatgaccgagccgagttttaaaactatg 29419863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 30269693 - 30269593
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| ||||| ||||||||||||||||||||||| || | ||||| | |||| ||||| |||| ||||||||||| ||||||||||||    
T  30269693 ttcagtcatgcggttcgaccaacgactcagtggttcgaccattaactcattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactat 30269594  T
Q  177 g 177  Q
    |    
T  30269593 g 30269593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 178
Target Start/End: Complemental strand, 30426452 - 30426317
Alignment:
Q  43 gagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctg 142  Q
    |||||||||| |||||||||  |||||||||   |||| ||||| |||||||||| ||||| ||||||||||||||||||  | | | ||| | |||       
T  30426452 gagtcatctatccgagttatttggtttaatctgattcaatcatgcggttcaaccagtgacttagtggttcgaccattaacttattgatccagtaccctgt 30426353  T
Q  143 ccgaatcgacgaccgagccgaattttaaaactatgt 178  Q
    |||| |||| ||||||||||||||||||||||||||    
T  30426352 ccgagtcgatgaccgagccgaattttaaaactatgt 30426317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 177
Target Start/End: Complemental strand, 8464382 - 8464281
Alignment:
Q  76 gttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaacta 175  Q
    ||||||||||| ||||| |||||||| | |||||||||||||||||| || | ||||| | |  |||||||   || |||||||||||||||||||||||    
T  8464382 gttcagtcatgcggttcgaccaatgatttagtggttcgaccattaactcagtgacccagtacatctgccgagctgatgaccgagccgaattttaaaacta 8464283  T
Q  176 tg 177  Q
    ||    
T  8464282 tg 8464281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 177
Target Start/End: Complemental strand, 21289651 - 21289551
Alignment:
Q  76 gttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaacta 175  Q
    ||||||||||| ||||| |||||||||||| ||||||||||||| ||||| | ||||| | |||| ||||| |||| ||||||||||| | | |||||||    
T  21289651 gttcagtcatgcggttcgaccaatgactcactggttcgaccattgacccattgacccagtacccc-gccgagtcgatgaccgagccgagtatgaaaacta 21289553  T
Q  176 tg 177  Q
    ||    
T  21289552 tg 21289551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 35166055 - 35166125
Alignment:
Q  52 aaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaac 122  Q
    ||||||||||| || |||||| ||||||||| ||| ||||||||||||||  ||||||||| |||| ||||    
T  35166055 aaccgagttatccgatttaatacagttcagttatgcggttcaaccaatgatccagtggttcaaccaataac 35166125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 22351258 - 22351303
Alignment:
Q  80 agtcatgtggttcaaccaatgactcagtggttcgaccattaaccca 125  Q
    ||||||| ||||| |||||||||||||||||||||||||| |||||    
T  22351258 agtcatgcggttcgaccaatgactcagtggttcgaccattgaccca 22351303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 34779909 - 34779981
Alignment:
Q  53 accgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaaccca 125  Q
    |||||||||| ||||||||||| ||||| | ||| ||||| | ||| |||||| ||||||||||||| |||||    
T  34779909 accgagttatccggtttaatccggttcaattatgcggttcgatcaacgactcactggttcgaccattgaccca 34779981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 19763413 - 19763468
Alignment:
Q  53 accgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtg 108  Q
    ||||||| || ||||||||||||||||  ||||| |||||||||||||| ||||||    
T  19763413 accgagtcatccggtttaatccagttctatcatgcggttcaaccaatgattcagtg 19763468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 175
Target Start/End: Original strand, 31513370 - 31513474
Alignment:
Q  71 atccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaa 170  Q
    |||| ||| ||||||| ||||| ||||||||| || |||||| |||||| ||||| | || || | ||||| |||| || | | ||||||||| ||||||    
T  31513370 atccggtttagtcatgcggttcgaccaatgacccaatggttcaaccattgacccattgactcagtaccccttccgagtcaatgtccgagccgagttttaa 31513469  T
Q  171 aacta 175  Q
    |||||    
T  31513470 aacta 31513474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 177
Target Start/End: Complemental strand, 7974 - 7839
Alignment:
Q  32 aatcttaagccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacc 131  Q
    ||||||||||||||||||||||||||||||| |||||          |||||||| ||||||||||| |||||||||||||||||||||||||||| ||     
T  7974 aatcttaagccgagtcatctaaccgagttatccggtt----------cagtcatgcggttcaaccaacgactcagtggttcgaccattaacccaatgact 7885  T
Q  132 caatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    || | ||  |||||| |||| ||||||||||| |||||||||||||    
T  7884 cagtacctttgccgagtcgatgaccgagccgagttttaaaactatg 7839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 80 - 177
Target Start/End: Original strand, 11039 - 11136
Alignment:
Q  80 agtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatg 177  Q
    ||||||| ||||| |||||||||||||||||||||||||| ||||| | ||||| | |||| ||||| |||| ||||||||||| |||||||||||||    
T  11039 agtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 11136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 12821 - 12721
Alignment:
Q  77 ttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaactat 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||| | ||||| | |||| ||||| |||| ||||||| ||| ||||||||||||    
T  12821 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagtcgagttttaaaactat 12722  T
Q  177 g 177  Q
    |    
T  12721 g 12721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 17854 - 17924
Alignment:
Q  76 gttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccga 146  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||| || || | ||||||||||    
T  17854 gttcagtcatgcggttcaaccaatgactcaatggttcgaccattaacccaatgactcagtacccctgccga 17924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 177
Target Start/End: Complemental strand, 52010 - 51909
Alignment:
Q  76 gttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacgaccgagccgaattttaaaacta 175  Q
    ||||||||||| ||||  ||||||||||| |||||||||||||| || || | ||||| | |||| ||||| |||| ||||||||||| |||||||||||    
T  52010 gttcagtcatgcggtttgaccaatgactctgtggttcgaccattgactcattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaacta 51911  T
Q  176 tg 177  Q
    ||    
T  51910 tg 51909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 7840 - 7916
Alignment:
Q  41 ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgacca 117  Q
    |||||||||  ||||||||||| || |||||| | ||||||||||| | ||||||||||||||||||||||||||||    
T  7840 ccgagtcatacaaccgagttatccgatttaatacggttcagtcatgcgattcaaccaatgactcagtggttcgacca 7916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 178
Target Start/End: Original strand, 4883 - 5031
Alignment:
Q  30 ttaatcttaag-ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaata 128  Q
    ||||||||||| |||  ||||||||| |||||||  |||||||||   |||||||| | || || ||||  |||||||||||||||||||||||| | |     
T  4883 ttaatcttaagaccggatcatctaactgagttatttggtttaatctgattcagtcaagcggctcgaccagcgactcagtggttcgaccattaaccgagtg 4982  T
Q  129 acccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatgt 178  Q
    ||||||   |||| |||| |||| ||||||||||| ||||||||||||||    
T  4983 acccaa-caccctaccgagtcgatgaccgagccgagttttaaaactatgt 5031  T

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Target: scaffold0709 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 178
Target Start/End: Original strand, 4903 - 5051
Alignment:
Q  30 ttaatcttaag-ccgagtcatctaaccgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaata 128  Q
    ||||||||||| |||  ||||||||| |||||||  |||||||||   |||||||| | || || ||||  |||||||||||||||||||||||| | |     
T  4903 ttaatcttaagaccggatcatctaactgagttatttggtttaatctgattcagtcaagcggctcgaccagcgactcagtggttcgaccattaaccgagtg 5002  T
Q  129 acccaatgcccctgccgaatcgacgaccgagccgaattttaaaactatgt 178  Q
    ||||||   |||| |||| |||| ||||||||||| ||||||||||||||    
T  5003 acccaa-caccctaccgagtcgatgaccgagccgagttttaaaactatgt 5051  T

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Target: scaffold0043 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 178
Target Start/End: Complemental strand, 64467 - 64344
Alignment:
Q  55 cgagttatacggtttaatccagttcagtcatgtggttcaaccaatgactcagtggttcgaccattaacccaataacccaatgcccctgccgaatcgacga 154  Q
    ||||| || |||||| ||||  |||||||||| |||||||||| |||| || ||||||||||||  || || | ||||| | ||  || ||| |||| ||    
T  64467 cgagtcatccggtttgatccgattcagtcatgcggttcaaccagtgacccaatggttcgaccatcgactcagtgacccagtacctatgtcgagtcgatga 64368  T
Q  155 ccgagccgaattttaaaactatgt 178  Q
    ||||||||| ||||||||||||||    
T  64367 ccgagccgagttttaaaactatgt 64344  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 147436 - 147480
Alignment:
Q  180 tattcaattcagaagtgcaaaaacaagcaaagaacattgtaatga 224  Q
    |||||||||| |||||  |||||||||||||||||||||||||||    
T  147436 tattcaattcggaagtagaaaaacaagcaaagaacattgtaatga 147480  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 29507 - 29551
Alignment:
Q  64 cggtttaatccagttcagtcatgtggttcaaccaatgactcagtg 108  Q
    ||||||||||||||||||| ||| ||||  |||||||||||||||    
T  29507 cggtttaatccagttcagtgatgcggtttgaccaatgactcagtg 29551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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