View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6406_high_1 (Length: 577)
Name: NF6406_high_1
Description: NF6406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6406_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 52852717 - 52852291
Alignment:
| Q |
18 |
ctatggagaactgatatcaattggcggacttggtccaagtgttaatgcaaaactgagttctactattgcacaaatccttcaaactaaactatacattgat |
117 |
Q |
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| T |
52852717 |
ctatggagaactgatatcaattggcggacttggtccaagtgttaatgcaaaactgagttctactattgcacaaatccttcaaactaaactatacattgat |
52852618 |
T |
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| Q |
118 |
agctccagattctacatcaaattttatgactcggaggtaaatttacgatttctttatagcttattttatgtatatatgactgtgaatgctggtgagtttg |
217 |
Q |
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| T |
52852617 |
agctccagattctacatcaaattttatgactcggaggtaaatttacgatttctttatagcttattttatgtatatatgactgtgaatgctggtgagtttg |
52852518 |
T |
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| Q |
218 |
atgcattcattcattcttatttgatgtgatgccatttcgtacattctaacttgtttattactatgaacttagaggtttctcgttgtgtttgttggaggag |
317 |
Q |
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| T |
52852517 |
atgcattcattcattcttatttgatgtgatgccatttcgtacattctaacttgtttattactatgaacttagaggtttctcgttgtgtttgttggaggag |
52852418 |
T |
|
| Q |
318 |
gcaaagataggtattaaattaatactcttctgggtcaaatttgttgctaatacatgttatttaagtagagattgatatctgatgttgtttagcaatactt |
417 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52852417 |
gcaaagataggtattaaattaatactcttctggggcaaatttgttgctaatacatgttatttaagtagagattgatatctgatgttgtttagcaatactt |
52852318 |
T |
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| Q |
418 |
tgactacaataacaagaaaagtatatt |
444 |
Q |
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| T |
52852317 |
tgactacaataacaagaaaagtatatt |
52852291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 52848731 - 52848607
Alignment:
| Q |
18 |
ctatggagaactgatatcaattggcggacttggtccaagtgttaatgcaaaactgagttctactattgcacaaatccttcaaactaaactatacattgat |
117 |
Q |
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|||||||||| ||||||||||||| || |||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||| || ||||| || |
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| T |
52848731 |
ctatggagaattgatatcaattgggggccttgatccaactgttaatgcaaaactgagttctactattgcacaaatcattcaaactaacttacacattcat |
52848632 |
T |
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| Q |
118 |
agctccagattctacatcaaatttt |
142 |
Q |
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|||||| |||||||||||||||||| |
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| T |
52848631 |
agctcccgattctacatcaaatttt |
52848607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 513 - 556
Target Start/End: Complemental strand, 52852296 - 52852253
Alignment:
| Q |
513 |
tatattgttcttataaagtcttggagtattaacatcatatcaat |
556 |
Q |
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| T |
52852296 |
tatattgttcttataaagtcttggagtattaacatcatatcaat |
52852253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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