View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6407_low_3 (Length: 381)
Name: NF6407_low_3
Description: NF6407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6407_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 32 - 371
Target Start/End: Complemental strand, 47019669 - 47019332
Alignment:
| Q |
32 |
gttcccttcatatttcatcttcaaatcctttgagaaaagtgtttccaaagagattgaatctctttcataaagaaaaatactacaacgattatcatagata |
131 |
Q |
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| T |
47019669 |
gttcccttcatatttcatcttcaaatcctttgagaaaagtgtttccaaagagattgaatctctttcataaagaaaaatactacaacgattatcatagatt |
47019570 |
T |
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| Q |
132 |
ctaggcaaagaatttaataacaacaatgtttggtcttcgttatcataaacttctacatccatcttcccaagatcaagaacgatcttgtacaatgaatcaa |
231 |
Q |
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| T |
47019569 |
ctaggcaaagaatttaataacaacaatgtttggtcttcgttatcataaacttctacatccatcttcccaagatcaagaacgatcttgtacaatgaatcaa |
47019470 |
T |
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| Q |
232 |
tgtgatcttcaactgactttcttggttacatcttcgttgtgtagagtttttgcttcaagtgtgtatttgatttgctaatgactttgttatgtatgatgtc |
331 |
Q |
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| T |
47019469 |
tgtgatcttcaactgactttcttggttacatcttcgttgtgtagagtttttgcttaaa--gtgtatttgatttgctaatgactttgttatctatgatgtc |
47019372 |
T |
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| Q |
332 |
tcaaattttagccatattccataagttgtagtttcctttg |
371 |
Q |
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| T |
47019371 |
tcaaattttagctatattccataagttgtagtttcctttg |
47019332 |
T |
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