View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6407_low_6 (Length: 246)

Name: NF6407_low_6
Description: NF6407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6407_low_6
NF6407_low_6
[»] chr7 (3 HSPs)
chr7 (20-239)||(39773128-39773347)
chr7 (63-187)||(32471254-32471378)
chr7 (60-154)||(29367451-29367545)
[»] chr1 (3 HSPs)
chr1 (98-239)||(49138095-49138235)
chr1 (62-147)||(29274471-29274555)
chr1 (61-131)||(4625255-4625330)
[»] chr6 (4 HSPs)
chr6 (62-175)||(6919323-6919436)
chr6 (61-143)||(10086064-10086146)
chr6 (86-165)||(8171134-8171212)
chr6 (62-119)||(28983386-28983443)
[»] chr8 (2 HSPs)
chr8 (62-216)||(32848037-32848191)
chr8 (101-175)||(9617998-9618072)
[»] chr5 (2 HSPs)
chr5 (61-175)||(34272243-34272357)
chr5 (61-184)||(15027009-15027131)
[»] chr2 (4 HSPs)
chr2 (63-159)||(5699923-5700019)
chr2 (61-187)||(31380498-31380626)
chr2 (117-175)||(13266812-13266870)
chr2 (61-226)||(12324429-12324594)
[»] chr4 (3 HSPs)
chr4 (99-176)||(5198895-5198972)
chr4 (62-216)||(45610540-45610695)
chr4 (98-143)||(4848732-4848777)
[»] chr3 (1 HSPs)
chr3 (122-170)||(54599755-54599803)


Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 39773128 - 39773347
Alignment:
Q  20 gcttctaattcatggtatgaattattttaaactatatctgtatgttatgattcaaaatgacatataaggaattacacatggcataacataattggttgag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39773128 gcttctaattcatggtatgaattattttaaactatatctgtatgttatgattcaaaatgacatataaggaattacacatggcataacataattggttgag 39773227  T
Q  120 aaaaatggacatgtggctagtgatcctaaaattaaggaagcttgaattgtgtataattagtgaaatgactttcattgatgggtatgaagaatattgaaga 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39773228 aaaaatggacatgtggctagtgatcctaaaattaaggaagcttgaattgtatataattagtgaaatgactttcattgatgggtatgaagaatattgaaga 39773327  T
Q  220 aaagtctctttctccctttg 239  Q
    ||||||||||||||||||||    
T  39773328 aaagtctctttctccctttg 39773347  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 187
Target Start/End: Complemental strand, 32471378 - 32471254
Alignment:
Q  63 gttatgattcaaaatgacatataaggaattacacatggcataacataattggttgagaaaaatggacatgtggctagtgatcctaaaattaaggaagctt 162  Q
    |||||||||||||||   |||| ||||| ||| | |||||||| || ||||||||||  |||||||||||| | ||||||||||||||| ||||||||||    
T  32471378 gttatgattcaaaatagaatatgaggaaatacgcttggcataatattattggttgaggcaaatggacatgtagttagtgatcctaaaatcaaggaagctt 32471279  T
Q  163 gaattgtgtataattagtgaaatga 187  Q
    | |||||| |||| ||| |||||||    
T  32471278 ggattgtgcataaatagagaaatga 32471254  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 154
Target Start/End: Complemental strand, 29367545 - 29367451
Alignment:
Q  60 tatgttatgattcaaaatgacatataaggaattacacatggcataacataattggttgagaaaaatggacatgtggctagtgatcctaaaattaa 154  Q
    |||||||||||||||||| | |||| ||||| ||||| | | |||| ||||||||||||   ||||||  | | ||||||| |||||||||||||    
T  29367545 tatgttatgattcaaaataatatatgaggaaatacacttagtataatataattggttgaagtaaatgggtacgcggctagtaatcctaaaattaa 29367451  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 239
Target Start/End: Original strand, 49138095 - 49138235
Alignment:
Q  98 tggcataacataattggttgagaaaaatggacatgtggctagtgatcctaaaattaaggaagcttgaattgtgtataattagtgaaatgactttcattga 197  Q
    |||||||||||||||||| |||  |||| ||||||| |||| | |||||||||| ||||||||||| |||||  |||| |||  |||||| | ||| | |    
T  49138095 tggcataacataattggtcgaggcaaattgacatgtagctattcatcctaaaataaaggaagcttggattgtacataaataggaaaatga-tatcaataa 49138193  T
Q  198 tgggtatgaagaatattgaagaaaagtctctttctccctttg 239  Q
    ||||||||||||| |||||||||||||||| |||||||||||    
T  49138194 tgggtatgaagaaaattgaagaaaagtctccttctccctttg 49138235  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 29274471 - 29274555
Alignment:
Q  62 tgttatgattcaaaatgacatataaggaattacacatggcataacataattggttgagaaaaatggacatgtggctagtgatccta 147  Q
    ||||||||||||||||  | ||||||||| ||||| |||||||||||| |||||||||| ||||||||||||||| ||||||||||    
T  29274471 tgttatgattcaaaatatc-tataaggaaatacacttggcataacatatttggttgagacaaatggacatgtggccagtgatccta 29274555  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 4625255 - 4625330
Alignment:
Q  61 atgttatgattcaaaatgacatataaggaatta-----cacatggcataacataattggttgagaaaaatggacat 131  Q
    ||||||| |||||||||||||||||||||||||      ||||  |||||||||||||||||||  ||||||||||    
T  4625255 atgttattattcaaaatgacatataaggaattatatttgacataacataacataattggttgaggtaaatggacat 4625330  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 6919323 - 6919436
Alignment:
Q  62 tgttatgattcaaaatgacatataaggaattacacatggcataacataattggttgagaaaaatggacatgtggctagtgatcctaaaattaaggaagct 161  Q
    ||||||||||||| ||  |||||  | || ||||| ||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||| ||| |    
T  6919323 tgttatgattcaatatagcatatgggaaaatacacttggcataacataattggttgaggcaaatggacatgtggctagtgatactaaaattaagaaagtt 6919422  T
Q  162 tgaattgtgtataa 175  Q
    || |||||| ||||    
T  6919423 tggattgtgcataa 6919436  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 10086064 - 10086146
Alignment:
Q  61 atgttatgattcaaaatgacatataaggaattacacatggcataacataattggttgagaaaaatggacatgtggctagtgat 143  Q
    |||||||||||||||||  || || || || ||||||| | | || |||||||||||||| ||||||||||||||||||||||    
T  10086064 atgttatgattcaaaatagcacatgagaaaatacacattgaaaaatataattggttgagataaatggacatgtggctagtgat 10086146  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 165
Target Start/End: Original strand, 8171134 - 8171212
Alignment:
Q  86 aggaattacacatggcataacataattggttgagaaaaatggacatgtggctagtgatcctaaaattaaggaagcttgaa 165  Q
    ||||| ||||| || |||||| |||||||||||   |||| ||||||||||||||||| ||||||| |||||||||||||    
T  8171134 aggaaatacacttgtcataacttaattggttgaagcaaattgacatgtggctagtgat-ctaaaatcaaggaagcttgaa 8171212  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 28983386 - 28983443
Alignment:
Q  62 tgttatgattcaaaatgacatataaggaattacacatggcataacataattggttgag 119  Q
    ||||||||||||| ||||||||| | ||| ||||| |||||||| || ||||||||||    
T  28983386 tgttatgattcaatatgacatatgatgaagtacacttggcataatattattggttgag 28983443  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 216
Target Start/End: Complemental strand, 32848191 - 32848037
Alignment:
Q  62 tgttatgattcaaaatgacatataaggaattacacatggcataacataattggttgagaaaaatggacatgtggctagtgatcctaaaattaaggaagct 161  Q
    |||||||||||||| |  |||||||  |||||||  ||||||||||| ||||||||||  ||||| ||||||||||  |||||||||||| ||||||| |    
T  32848191 tgttatgattcaaatttgcatataaaaaattacatttggcataacatcattggttgaggtaaatgaacatgtggctcatgatcctaaaatcaaggaagtt 32848092  T
Q  162 tgaattgtgtataattagtgaaatgactttcattgatgggtatgaagaatattga 216  Q
    || |||||| |||| ||| |||||||   ||| | |||||||| ||||| |||||    
T  32848091 tggattgtgcataaatagagaaatgatgatcaataatgggtatcaagaaaattga 32848037  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 9618072 - 9617998
Alignment:
Q  101 cataacataattggttgagaaaaatggacatgtggctagtgatcctaaaattaaggaagcttgaattgtgtataa 175  Q
    |||| ||||||||||||||  ||| ||| |||||||||||||||||| ||| || |||| ||| |||||| ||||    
T  9618072 catatcataattggttgaggcaaagggagatgtggctagtgatcctagaatcaatgaagtttggattgtgcataa 9617998  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 34272243 - 34272357
Alignment:
Q  61 atgttatgattcaaaatgacatataaggaattacacatggcataacataattggttgagaaaaatggacatgtggctagtgatcctaaaattaaggaagc 160  Q
    |||||||||||||||||  ||||| || || ||||  ||||||||||||||||||| ||  ||||||||||||| |||||||||||||||| ||||| ||    
T  34272243 atgttatgattcaaaatagcatatgagaaaatacatttggcataacataattggtttaggtaaatggacatgtgactagtgatcctaaaatcaaggatgc 34272342  T
Q  161 ttgaattgtgtataa 175  Q
    ||  |||||| ||||    
T  34272343 ttagattgtgcataa 34272357  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 184
Target Start/End: Complemental strand, 15027131 - 15027009
Alignment:
Q  61 atgttatgattcaaaatgacatataaggaattacacatggcataacataattggttgagaaaaatggacatgtggctagtgatcctaaaattaaggaagc 160  Q
    |||||||||| |||||| ||| || || || ||||  ||||||||||||||||||||||  |||| ||||   |||||||||||||||||| |||||| |    
T  15027131 atgttatgatccaaaataacacatgagaaaatacatttggcataacataattggttgaggtaaat-gacactcggctagtgatcctaaaatcaaggaacc 15027033  T
Q  161 ttgaattgtgtataattagtgaaa 184  Q
    || | ||||| |||  ||||||||    
T  15027032 ttaagttgtgcatatatagtgaaa 15027009  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 159
Target Start/End: Original strand, 5699923 - 5700019
Alignment:
Q  63 gttatgattcaaaatgacatataaggaattacacatggcataacataattggttgagaaaaatggacatgtggctagtgatcctaaaattaaggaag 159  Q
    |||||||||||||||  ||||| ||||| ||||| ||||||||||||||||||| ||  ||||| ||| ||| |||||||||||||||| |||||||    
T  5699923 gttatgattcaaaatagcatattaggaaatacacttggcataacataattggttaaggtaaatgaacacgtgactagtgatcctaaaatcaaggaag 5700019  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 187
Target Start/End: Original strand, 31380498 - 31380626
Alignment:
Q  61 atgttatgattcaaaatgacatataaggaattacacatggcataacataattgg--ttgagaaaaatggacatgtggctagtgatcctaaaattaaggaa 158  Q
    ||||||||||||||| |  |||||  |||| ||||| | |||||||||||||||  |||| | ||||||||| ||||||| | |||||||||| || |||    
T  31380498 atgttatgattcaaagtagcatatgtggaaatacacttagcataacataattggggttgatataaatggacacgtggctaatcatcctaaaatcaatgaa 31380597  T
Q  159 gcttgaattgtgtataattagtgaaatga 187  Q
     ||||| ||||| |||| |||||||||||    
T  31380598 ccttgagttgtgcataaatagtgaaatga 31380626  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 13266812 - 13266870
Alignment:
Q  117 gagaaaaatggacatgtggctagtgatcctaaaattaaggaagcttgaattgtgtataa 175  Q
    |||| ||||||||||||||||||| ||  |||||||||||||||||| |||||| ||||    
T  13266812 gagataaatggacatgtggctagtaattttaaaattaaggaagcttggattgtgcataa 13266870  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 226
Target Start/End: Original strand, 12324429 - 12324594
Alignment:
Q  61 atgttatgattcaaaatgacatataaggaattacacatggcataacataattggttgagaaaaatggacatgtggctagtgatcctaaaattaaggaagc 160  Q
    |||||||||||||||||  ||||| ||||| ||||  || | |||||||||| ||||||  ||||||| | |||||  |||||| |||||| ||| || |    
T  12324429 atgttatgattcaaaatagcatatgaggaaatacatttgacctaacataattagttgaggtaaatggagacgtggcgtgtgatcttaaaatcaagtaacc 12324528  T
Q  161 ttgaattgtgtataattagtgaaatgactttcattgatgggtatgaagaatattgaagaaaagtct 226  Q
    |||| ||||| ||||   |||||||||   ||| |  |||  |||||||| |||||||||||||||    
T  12324529 ttgagttgtgcataaacggtgaaatgaggatcaatagtggacatgaagaaaattgaagaaaagtct 12324594  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 5198972 - 5198895
Alignment:
Q  99 ggcataacataattggttgagaaaaatggacatgtggctagtgatcctaaaattaaggaagcttgaattgtgtataat 176  Q
    |||||||||||||||||||||  ||||||||||||||||||||||   ||||| | ||||||||| ||| || |||||    
T  5198972 ggcataacataattggttgaggcaaatggacatgtggctagtgattaaaaaatcatggaagcttggattatgcataat 5198895  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 216
Target Start/End: Original strand, 45610540 - 45610695
Alignment:
Q  62 tgttatgattcaaaatg-acatataaggaattacacatggcataacataattggttgagaaaaatggacatgtggctagtgatcctaaaattaaggaagc 160  Q
    |||||||||||||| || ||||| ||| |||||||| |||||||| |||||| ||||||  |||| |||||||  |||||||| |||| || |||||||     
T  45610540 tgttatgattcaaattggacatagaagtaattacacttggcataatataatttgttgaggcaaatagacatgtaactagtgattctaagatcaaggaagg 45610639  T
Q  161 ttgaattgtgtataattagtgaaatgactttcattgatgggtatgaagaatattga 216  Q
    ||   ||||| |||| ||| | || || | ||| | |||| |||||||||||||||    
T  45610640 tttggttgtgcataaataggggaaagattatcaataatggttatgaagaatattga 45610695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 4848732 - 4848777
Alignment:
Q  98 tggcataacataattggttgagaaaaatggacatgtggctagtgat 143  Q
    |||||||||||||||||||||   ||||||||||||||||||||||    
T  4848732 tggcataacataattggttgacgcaaatggacatgtggctagtgat 4848777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 54599755 - 54599803
Alignment:
Q  122 aaatggacatgtggctagtgatcctaaaattaaggaagcttgaattgtg 170  Q
    ||||| ||||||||| ||||||||||||||||||||| ||| |||||||    
T  54599755 aaatgaacatgtggcgagtgatcctaaaattaaggaaacttaaattgtg 54599803  T

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