View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6407_low_9 (Length: 227)
Name: NF6407_low_9
Description: NF6407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6407_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 7 - 210
Target Start/End: Complemental strand, 35278865 - 35278662
Alignment:
| Q |
7 |
tcaattaatgttaattcatggttcttggtttcacagtgctaaataatcaaatctattcatacattactaaatttcaggccccgcaaataatcaactctac |
106 |
Q |
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| T |
35278865 |
tcaattaatgttaattcatggttcttggtttcacagtgctaaataatcaaatctattcatacattactaaatttcaggccccgcaaataatcaactctac |
35278766 |
T |
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| Q |
107 |
ccctcaaataattcaggatgggtattctattcaaaccattacaagtaaatttctattctatacatctttggcatcacaattctgtcatttcatatacttc |
206 |
Q |
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| T |
35278765 |
ccgtcaaataattcaggatgggtattctattcaaagcattacaagtaaatttctattctatacatctttggcatcacaattctgtcatttcatatacttc |
35278666 |
T |
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| Q |
207 |
acaa |
210 |
Q |
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|||| |
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| T |
35278665 |
acaa |
35278662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 35241990 - 35241885
Alignment:
| Q |
104 |
tacccctcaaataattcaggatgggtattctattcaaaccattacaagtaaatttctattctatacatctttggcatcacaattctgtcatttcatatac |
203 |
Q |
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|||||||||||| |||| |||||| |||||||||||| | ||| ||||||||||||||||| | |||||||||||||||||||||||||||| |||||| |
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| T |
35241990 |
tacccctcaaatgattcgggatggatattctattcaacactttataagtaaatttctattctttgcatctttggcatcacaattctgtcattt-atatac |
35241892 |
T |
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| Q |
204 |
ttcacaa |
210 |
Q |
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||||||| |
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| T |
35241891 |
ttcacaa |
35241885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 35254213 - 35254107
Alignment:
| Q |
103 |
ctacccctcaaataattcaggatgggtattctattcaaaccattacaagtaaatttctattctatacatctttggcatcacaattctgtcatttcatata |
202 |
Q |
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| T |
35254213 |
ctacccctcaaataattctggaaggacattctattcaagagcttgcatgtaaatttatattctatacatcgttggcatcacaattctgtcatttcatata |
35254114 |
T |
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| Q |
203 |
cttcaca |
209 |
Q |
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||||||| |
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| T |
35254113 |
cttcaca |
35254107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 35247627 - 35247521
Alignment:
| Q |
104 |
tacccctcaaataattcaggatgggtattctattcaa-accattacaagtaaatttctattctatacatctttggcatcacaattctgtcatttcatata |
202 |
Q |
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||||||||||||||||| |||| |||||||||||| ||||| ||||||| |||||||||| |||||| ||||||||||||||||||||||||||| | |
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| T |
35247627 |
tacccctcaaataattcgggataaatattctattcaacaccatg-caagtaagtttctattctttacatcgttggcatcacaattctgtcatttcataaa |
35247529 |
T |
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| Q |
203 |
cttcacaa |
210 |
Q |
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|||||||| |
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| T |
35247528 |
cttcacaa |
35247521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 175
Target Start/End: Complemental strand, 35272128 - 35272057
Alignment:
| Q |
104 |
tacccctcaaataattcaggatgggtattctattcaaaccattacaagtaaatttctattctatacatcttt |
175 |
Q |
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||||||||||||||||| |||||| ||| |||||||| | || ||||||||||| |||||||||||||| |
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| T |
35272128 |
tacccctcaaataattccggatggatatgctattcaacaccttgagagtaaatttcttttctatacatcttt |
35272057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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