View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6408_high_6 (Length: 228)
Name: NF6408_high_6
Description: NF6408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6408_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 29286449 - 29286228
Alignment:
| Q |
1 |
tcacattcaattttcaaaccacttttccctttttattagaatgatgattgtgatactttcactaccaaaaagaatgattctttctcattctcnnnnnnna |
100 |
Q |
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| T |
29286449 |
tcacattcaattttcaaaccacttttccctttttattagaatgatgattgtgatactttcactaccaaaaagaatgatattttctcattctcttttttta |
29286350 |
T |
|
| Q |
101 |
tgatgtatatgttcttactaatgtaattacattaattcacttttaaatttatatattacaaatccaattatatttcattctctctttttataggcatatt |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
29286349 |
tgatgtatatgttcttactaatgtaattacattaattcacttttaaatttatatattacaaatccaattatatttcattctctttttttataggcacatt |
29286250 |
T |
|
| Q |
201 |
ccattctccttaaatttgaaag |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
29286249 |
ccattctccttaaatttgaaag |
29286228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 100 - 222
Target Start/End: Complemental strand, 39595153 - 39595031
Alignment:
| Q |
100 |
atgatgtatatgttcttactaatgtaattacattaattcacttttaaatttatatattacaaatccaattatatttcattctctctttttataggcatat |
199 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| ||||||| ||||||| |
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| T |
39595153 |
atgatgtatatgttctaactaatgtaattacattaattcacttttaaatatatatattacaaatccagtactatttcattctctttttttatgggcatat |
39595054 |
T |
|
| Q |
200 |
tccattctccttaaatttgaaag |
222 |
Q |
| |
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||| ||||||||||||||||||| |
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|
| T |
39595053 |
tccgttctccttaaatttgaaag |
39595031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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