View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6408_low_8 (Length: 213)
Name: NF6408_low_8
Description: NF6408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6408_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 1911018 - 1911166
Alignment:
| Q |
20 |
gtgattataggcaatgaatgttctgacatggctttactcactttgttcaaagctgtaacacttcaagggatgaacaatcatgtctttattgcttatgctt |
119 |
Q |
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||||||||| || |||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1911018 |
gtgattatatgctatgaatgtattgacatggctttactcactttgttcaaagcagctacacttcaagggatgaacaatcatgtctttattgcttatgctt |
1911117 |
T |
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| Q |
120 |
atgctgttggtacttctgttcttcttcctgtcactcttttcaatagaag |
168 |
Q |
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| T |
1911118 |
atgctgttggtacttctgttcttctccctgtcactcttttcactagaag |
1911166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 1901973 - 1902083
Alignment:
| Q |
20 |
gtgattataggcaatgaatgttctgacatggctttactcactttgttcaaagctgtaacacttcaagggatgaacaatcatgtctttattgcttatgctt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1901973 |
gtgattataggcaatgaatgttctgacatggctttactcactttgttcaaagctgtaacacttcaagggatgaacaaccatgtctttattgcttatgctt |
1902072 |
T |
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| Q |
120 |
atgctgttggt |
130 |
Q |
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| T |
1902073 |
atgctgttggt |
1902083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 47 - 196
Target Start/End: Original strand, 1895589 - 1895738
Alignment:
| Q |
47 |
atggctttactcactttgttcaaagctgtaacacttcaagggatgaacaatcatgtctttattgcttatgcttatgctgttggtacttctgttcttcttc |
146 |
Q |
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| T |
1895589 |
atggctttactcactttgttcaaagcagccacaaatcaagggatgaacaaccatgtctttgttgcttattcttatgctgttggtacttctgttcttcttc |
1895688 |
T |
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| Q |
147 |
ctgtcactcttttcaatagaagtagaaggttcacatttatttattgcaat |
196 |
Q |
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| T |
1895689 |
ctgtcacacttttcactagaagtagaaggttcacatttatctattgcaat |
1895738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 1884068 - 1884207
Alignment:
| Q |
20 |
gtgattataggcaatgaatgttctgacatggctttactcactttgttcaaagctgtaacacttcaagggatgaacaatcatgtctttattgcttatgctt |
119 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
1884068 |
gtgattataggcaatgaatgtgttgacatggctttactgactttgttcaaagcagctacacttcaagggatgaacaatcatgtctttgttgcctatgctt |
1884167 |
T |
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| Q |
120 |
atgctgttggtacttctgttcttcttcctgtcactctttt |
159 |
Q |
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| T |
1884168 |
atgctgttgcaacttcttttctccttcctatcactttttt |
1884207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 1905506 - 1905581
Alignment:
| Q |
125 |
gttggtacttctgttcttcttcctgtcactcttttcaatagaagtagaaggttcacatttatttattgcaatattc |
200 |
Q |
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| T |
1905506 |
gttggtacttctgttcttcttcctgtcactcttttcaatagaagtagaaggttcacatttatttattgcaatattc |
1905581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 47 - 159
Target Start/End: Original strand, 1890739 - 1890851
Alignment:
| Q |
47 |
atggctttactcactttgttcaaagctgtaacacttcaagggatgaacaatcatgtctttattgcttatgcttatgctgttggtacttctgttcttcttc |
146 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| || |||| |||| |
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| T |
1890739 |
atggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttc |
1890838 |
T |
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| Q |
147 |
ctgtcactctttt |
159 |
Q |
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|| ||||| |||| |
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| T |
1890839 |
ctatcactttttt |
1890851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 43 - 162
Target Start/End: Original strand, 1878079 - 1878198
Alignment:
| Q |
43 |
tgacatggctttactcactttgttcaaagctgtaacacttcaagggatgaacaatcatgtctttattgcttatgcttatgctgttggtacttctgttctt |
142 |
Q |
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|||| |||||||| ||| ||| | |||||| | |||||||||||||||||||| |||| ||| |||| ||||||||||||||||||||||||||||| |
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| T |
1878079 |
tgacgtggctttagtcattttatacaaagcagccacacttcaagggatgaacaactatgtttttgttgcctatgcttatgctgttggtacttctgttctc |
1878178 |
T |
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| Q |
143 |
cttcctgtcactcttttcaa |
162 |
Q |
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|||||| |||| ||||||| |
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| T |
1878179 |
cttcctatcacctttttcaa |
1878198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 11537500 - 11537577
Alignment:
| Q |
19 |
agtgattataggcaatgaatgttctgacatggctttactcactttgttcaaagctgtaacacttcaagggatgaacaa |
96 |
Q |
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||||||||||||| |||| || | |||||||| ||| ||||||||||||||||| | | |||| |||||||||||||| |
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| T |
11537500 |
agtgattataggctatgagtgatgtgacatgggtttgctcactttgttcaaagcagcaccactgcaagggatgaacaa |
11537577 |
T |
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