View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6409_high_1 (Length: 987)
Name: NF6409_high_1
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6409_high_1 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 450; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 10 - 556
Target Start/End: Original strand, 50456482 - 50457010
Alignment:
| Q |
10 |
acatcatcatagatcatttatctcatttgcacgcctactatatatacttcgatttcgtctctccgcttattctgcttctgattgaatacaaattacaaat |
109 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50456482 |
acatcatcgtagatcatttgtctcatttgcacgcctactatatatacttcgatttcgtctctccgcttattctgcttctgattgaatacaaattacaaa- |
50456580 |
T |
|
| Q |
110 |
tacaaactctccgctcagccccagcgatctcaatctctcattctacatcttcccgttcaaatctcggtatgttttctgtttcttcttcatcctttgatta |
209 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50456581 |
------ctctctgctcagccccagcgatctcaatctctcattctacatcttcccgttcaaatctcggtatgttttctgtttcttcttcatcctttgatta |
50456674 |
T |
|
| Q |
210 |
gtatttcaatttctttgcgttaatcttccggaaggggttctctaatcgaatattttgtcttttgttggagctgattaaccacttagcccagttacttggt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50456675 |
gtatttcaatttctttgcgttaatcttccggaaggggttctctaatcgaatattttgtcttttgttggagctgattaaccacttagcccagttacttggt |
50456774 |
T |
|
| Q |
310 |
taagaaaagttaagaaatgaaagatagtagtggaatcatcgtggtgggtgccgactggaatttaaatgagaatttatttttctgtacttagctacgagta |
409 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50456775 |
ta----------agaaatgaaagatagtagtggaatcatcgtggtgggtgccgattggaatttaaatgagaatttatttttctgtacttagctacgagta |
50456864 |
T |
|
| Q |
410 |
gttccataattctataagaggtcaaagataagagagagaaaaaactaagataacataagctaaagctatacatgttacaactaaagtaacgaaatttgag |
509 |
Q |
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| T |
50456865 |
gttgcataattctataagaggtcaaagataagagaaaaaaaaaactaagataacataagctaaagctatacatgttacaactaaagtaacgaaatttgag |
50456964 |
T |
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| Q |
510 |
tgattttattatgctgttaaacagtaccatttcaataacaaaactgt |
556 |
Q |
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| T |
50456965 |
tga-tttattatgctgttaaacagtaccatttcaataacaaaactgt |
50457010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 578 - 972
Target Start/End: Original strand, 50457007 - 50457401
Alignment:
| Q |
578 |
ctgtaatattaattgattgttattccttattgttattattgtctgcatttagtatgctattaattttgaggcaaatagtcatgtttgttcctgaatgcgt |
677 |
Q |
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||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50457007 |
ctgtactattacttgattgttattccatattgttattattgtctgcatttagtatgctattaattttgaggcaaatagtcatttttgttcctgaatgcgt |
50457106 |
T |
|
| Q |
678 |
aacgagtagtcacaattgtcctcgatgtagcgaaattataaaatagtcatgattgtacactctttagtcaaaatagtatttgatgttaaaatgtttcctt |
777 |
Q |
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| T |
50457107 |
aacgagtagtcacaattgtcctcgatgtagcgaaattataaaatagtcatgattgtacactctttagtcaaaatagtatttgatgttaaaatgtttcctt |
50457206 |
T |
|
| Q |
778 |
taatgccatgacctaaagtgtggtgagttaacatacagagggttaaaatggggaataggcatgattgatgtaagcatttcttgaacagaaataatagcat |
877 |
Q |
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||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
50457207 |
taacgccatgacctaaagtgtggtgagttaacatacggagggttaaaacggggaataggcatgattgatgtaagcatttcttgatcagaaataatagcat |
50457306 |
T |
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| Q |
878 |
ttgttcttgtcatagattattttgattaatggagtgcacgagcagttactattttgtaattttgctacattggaggatcattgtggctattcttt |
972 |
Q |
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| T |
50457307 |
ttgttctcgccatagattattttgactaatggagtgcacgagcagttactattttgtaattttgctacattggaggatcattgtggctattcttt |
50457401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 736 - 787
Target Start/End: Original strand, 40243124 - 40243175
Alignment:
| Q |
736 |
actctttagtcaaaatagtatttgatgttaaaatgtttcctttaatgccatg |
787 |
Q |
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|||| ||| |||||||||| ||| ||||||||||||||||||||||| |||| |
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| T |
40243124 |
actcgttaatcaaaatagtctttaatgttaaaatgtttcctttaatgtcatg |
40243175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 742 - 787
Target Start/End: Original strand, 3859902 - 3859947
Alignment:
| Q |
742 |
tagtcaaaatagtatttgatgttaaaatgtttcctttaatgccatg |
787 |
Q |
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| T |
3859902 |
tagtcaaaatagtatttgacgttaaaatgtttcctttaacgccatg |
3859947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 651 - 766
Target Start/End: Complemental strand, 516097 - 515979
Alignment:
| Q |
651 |
aatagtcatgtttgttcctgaatgcgtaacgagtagtcacaattgt-cctcgatgtagcgaaattataaaatagtc-atgattgtacac-tctttagtca |
747 |
Q |
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||||||||| || || |||||||| ||||||||||||||||| || || |||||| ||||||| ||||||||| |||||||| ||| || ||||||| |
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| T |
516097 |
aatagtcattttggtccctgaatgtgtaacgagtagtcacaacagtaacttgatgtatcgaaattccaaaatagtcaatgattgtgcacttcgttagtca |
515998 |
T |
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| Q |
748 |
aaatagtatttgatgttaa |
766 |
Q |
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| T |
515997 |
aaatagtctctgatgttaa |
515979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 727 - 773
Target Start/End: Complemental strand, 37600 - 37555
Alignment:
| Q |
727 |
tgattgtacactctttagtcaaaatagtatttgatgttaaaatgttt |
773 |
Q |
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| T |
37600 |
tgattgttcact-tttagtaaaaatagtatttgatgttaaaatgttt |
37555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 741 - 791
Target Start/End: Original strand, 40355314 - 40355364
Alignment:
| Q |
741 |
ttagtcaaaatagtatttgatgttaaaatgtttcctttaatgccatgacct |
791 |
Q |
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||||| |||||||| | ||| ||||||||||||||||||| |||||||||| |
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| T |
40355314 |
ttagttaaaatagtctctgacgttaaaatgtttcctttaacgccatgacct |
40355364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 741 - 774
Target Start/End: Original strand, 2986973 - 2987006
Alignment:
| Q |
741 |
ttagtcaaaatagtatttgatgttaaaatgtttc |
774 |
Q |
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| T |
2986973 |
ttagtcaaaatagtatttaatgttaaaatgtttc |
2987006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 651 - 738
Target Start/End: Complemental strand, 917263 - 917174
Alignment:
| Q |
651 |
aatagtcatgtttgttcctgaatgcgtaacgagtagtcacaattgt-cctcgatgtagcgaaattataaaatagtc-atgattgtacact |
738 |
Q |
| |
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||||||||| || ||||||||||| |||| | |||||||||| || |||| ||||| ||||||| |||||||||| |||||||||||| |
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| T |
917263 |
aatagtcattttggttcctgaatgtgtaaatattagtcacaatcgtccctcaatgtatcgaaattttaaaatagtctttgattgtacact |
917174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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