View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6409_high_11 (Length: 438)
Name: NF6409_high_11
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6409_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 429
Target Start/End: Complemental strand, 36075949 - 36075554
Alignment:
| Q |
16 |
catattttaggttgattgaagaagaaaatgaggaagtggagtggcataaaagaggtttggaatcctttgatccctttgagaggttaatttaagtgcttcg |
115 |
Q |
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| T |
36075949 |
catattttaggttgattgaagaagaaaatgaggaagtggagtggcataaaagaggtttggaatcctttgatccctttgagaggttaatttaagtg----- |
36075855 |
T |
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| Q |
116 |
ttattgtgttatggttgtggtaaactcgaaactattaatcacatcttt-caaatatggttgttggcaataaacgagtcattctattcaatttttcagatt |
214 |
Q |
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| T |
36075854 |
--------ttatggttgtggtaaactcgaaactattaatcacatcttttcaattatggttgttggcaataaacgagtcattctattcaattattcagatt |
36075763 |
T |
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| Q |
215 |
gtgtgaaaaaactgaagatttatgttcagttgtgtatgtatgtgggaaatgtatcccttaagatcgagcttataaatccaagaccagtggctagaaatgt |
314 |
Q |
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| T |
36075762 |
gtgtgaaaaaactgaagatttatgttcagttgtgtatgtatgtgggaaatgtatccgttaagatcgagcttataaatccaagaccagtggctagaaatgt |
36075663 |
T |
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| Q |
315 |
atcaagttctcttaaattttgaggttctaaatccaagaccagcagaaataagcatcaatttcatcattattatggttgagattatgaggcatttaacttt |
414 |
Q |
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| T |
36075662 |
atcaagttctcttaaattttgaggttctaaatccaagaccagcaga---aagcatcaatttcatcattattatggttgag---ataaggcatttaacttt |
36075569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 94
Target Start/End: Original strand, 4217331 - 4217361
Alignment:
| Q |
64 |
aaagaggtttggaatcctttgatccctttga |
94 |
Q |
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| T |
4217331 |
aaagaggtttggaatcctttgatccctttga |
4217361 |
T |
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