View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6409_high_12 (Length: 398)
Name: NF6409_high_12
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6409_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 33909706 - 33910082
Alignment:
| Q |
1 |
aaaaactgttcatatcattataatcagttatttcaaaaaaatcattataataagttgaagnnnnnnnnnn-cataacaattcatatattcccaaccctac |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| ||| |
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| T |
33909706 |
aaaaactgttcatatcattataatcagttatttcaaaaaaatcattataatcagttgaagaaaaaaaaaaacataacaattcgtatattcccaaccttac |
33909805 |
T |
|
| Q |
100 |
aaatatattgtccaaaagattgtacatgat--tggcaactcagaattaattgttttgctgaacaacttttcatcaaattgacataaaa-aattgcacatg |
196 |
Q |
| |
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||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| |
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| T |
33909806 |
aaatatattgtccgaaagattgcacatgatattggcaactcagaattaattgttttgccgaacaacttttcatcaaattcacataaaaaaattgcacatg |
33909905 |
T |
|
| Q |
197 |
attgaaccctttaaagcaatattacgatatgttacttgttagtttggtggcattgataaacttttgattttgattaaatacatgttgcggaccttgtgag |
296 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33909906 |
attggaccctttaaagcaatattacgatatgttacttgttagtttggtgccattgataaacttttgattttgattaaatacatgttgtggaccttgtga- |
33910004 |
T |
|
| Q |
297 |
ttaaggcaaaacagtgttaatgctcttagaggaagaccgttggagcacatttgcaagtgcttttataatttttcaatctgcccctatattctt |
389 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33910005 |
---------------gttaatgctcttagaggaagaccgttggagcacatttgcaagtgcttttataatttttcaatctgcccctatattctt |
33910082 |
T |
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