View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6409_high_2 (Length: 724)
Name: NF6409_high_2
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6409_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 178 - 704
Target Start/End: Complemental strand, 32023046 - 32022539
Alignment:
| Q |
178 |
aatatacaattgtactttattttacattctccttgtacttatat-----agtttctcgacctaaactaccaaagcaaaaattaattttcaaaactataaa |
272 |
Q |
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| T |
32023046 |
aatatacaattgtactttattttacattctccttgtacttatattatatagtttctcgacctaaacaaccaaagcaaaaattaattttcaaaactataaa |
32022947 |
T |
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| Q |
273 |
atccatttatgtttcatcgacgtttctgttcaaaactattaaatccctctgcagataaaaacaaaattaccaatcaattaatcttctattttttcacaaa |
372 |
Q |
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| T |
32022946 |
atccatttatgtttcatcgacgtgtctgttcaaaactattaaatccctctgcagataaaaacaaaattaccaatcaattaatcttctattttttcacaaa |
32022847 |
T |
|
| Q |
373 |
gcattaaactagtcctctactttttaccattccaaaattagctacatttaccactattaaccaaactcctttttcctcactttaacaccttcatctacca |
472 |
Q |
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| T |
32022846 |
gcattaaactagtcctctactttttaccattccaaaattagctaca-ttaccactatttaccaaactcctttttcctcactttaacaccttcatctacca |
32022748 |
T |
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| Q |
473 |
accaac-aactcaacagatccaatcacttnnnnnnnnnnnnnnnnnatttttcaaaccaataaatcaagcactcaactccacactccctcactcacttta |
571 |
Q |
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| T |
32022747 |
accaacaaactcaacagatccaatcactt--------tctctctctatttttcaaaccaataaatcaagcactcaactccacactccctcactca----- |
32022661 |
T |
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| Q |
572 |
ctttcctaataacccnnnnnnnntggcttccaaaaaagcacttctatatttcaacttatcacttctcattgcaacaatctctcttcttccatttccaact |
671 |
Q |
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| T |
32022660 |
-taaccaaaaaa----------atggcttccaaaaaagcacttctatacttcaacttatcacttctcattacaacaatctctcttcttccatttccaact |
32022572 |
T |
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| Q |
672 |
tcctcatctcgcatcattacttcacacacctcc |
704 |
Q |
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| T |
32022571 |
tcctcatctcgcatcattacttcacacacctcc |
32022539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 32023127 - 32023064
Alignment:
| Q |
130 |
attgtacataatatacatacctagattaaaaatatgaaacaatcacataatatacaattgtact |
193 |
Q |
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| T |
32023127 |
attgtacataatatacatacctagattaaaaatatgaaacaatcacataatatacaattgtact |
32023064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 32023239 - 32023206
Alignment:
| Q |
18 |
ttaaaatcaatttatattgataatgcatcatttc |
51 |
Q |
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| T |
32023239 |
ttaaaatcaatttatattgataatgcatcgtttc |
32023206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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