View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6409_high_20 (Length: 251)
Name: NF6409_high_20
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6409_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 37207319 - 37207086
Alignment:
| Q |
5 |
aatatattttaatttagatataacaattctctccnnnnnnnncaatttaattatatttttacggtgggagaataaatttatagagtatgtgtcaaaatca |
104 |
Q |
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| T |
37207319 |
aatatattttaatttagatataacaattctctccaaaaaaaacaatttaattatatttttacggtgggagaataaatttgtagagtatgtgtcaaaatca |
37207220 |
T |
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| Q |
105 |
taacttatctagcatgtactatgcactagcaccacgttaatgcctaaaataatggcacaatgcaaataatatgttacatcaaggctattttggacatttt |
204 |
Q |
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|||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37207219 |
taacttgcctagcatgtactatgcaccagcaccacattaatgcctaaaataatggcacaatgcaaataatatgttacatcaaggctattttggacatttt |
37207120 |
T |
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| Q |
205 |
tcatgaagttggtgcatttttcttgcttccgtct |
238 |
Q |
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| T |
37207119 |
tcatgaagttggtgcatttttcttgttttcgtct |
37207086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 5 - 234
Target Start/End: Original strand, 44558168 - 44558396
Alignment:
| Q |
5 |
aatatattttaatttagatataacaattctctccnnnnnnnncaatttaattatatttttacggtgggagaataaatttatagagtatgtgtcaaaatca |
104 |
Q |
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| T |
44558168 |
aatatattttaatttagatataacaattctctccaaaaaaa-caatttaattatatttttacggtatgagaataaatttgtagagtacgtgtcaaaatca |
44558266 |
T |
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| Q |
105 |
taacttatctagcatgtactatgcactagcaccacgttaatgcctaaaataatggcacaatgcaaataatatgttacatcaaggctattttggacatttt |
204 |
Q |
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| T |
44558267 |
taacttacctagcatgtactatgcacaagcaccacgttaatgcctaaaataatggcacaatgcaaataatatggtacatcaaggctattttggacatttt |
44558366 |
T |
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| Q |
205 |
tcatgaagttggtgcatttttcttgcttcc |
234 |
Q |
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| T |
44558367 |
tcatgaagttggtgcatttttcttgtttcc |
44558396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 60 - 226
Target Start/End: Complemental strand, 28155136 - 28154976
Alignment:
| Q |
60 |
tttttacggtgggagaataaatttatagagtatgtgtcaaaatcataacttatctagcatgtactatgcactagcaccacgttaatgcctaaaataa-tg |
158 |
Q |
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| T |
28155136 |
tttttactgtgggagaagaaattcgtaaagtatgtg-caaaatcataacttgcctagtatgtactatgcac------catgttaatgtctaaaaaaaatg |
28155044 |
T |
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| Q |
159 |
gcacaatgcaaataatatgttacatcaaggctattttggacatttttcatgaagttggtgcatttttc |
226 |
Q |
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| T |
28155043 |
acacaatgcaaataatgtatttcatcaaggctattttggtcttttttcatgaagttggtgcatttttc |
28154976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 18484949 - 18484862
Alignment:
| Q |
150 |
aaaataatggcacaatgcaaataatatgttacatcaaggctattttggacatttt-tcatgaagttggtgcatttttcttgcttccgt |
236 |
Q |
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|||| |||||||||||| |||||||| ||| |||||||||||||||||| |||| |||||||||||||| |||| |||| |||||| |
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| T |
18484949 |
aaaaaaatggcacaatgttaataatatattatatcaaggctattttggactttttatcatgaagttggtgttttttccttgtttccgt |
18484862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 5788344 - 5788398
Alignment:
| Q |
150 |
aaaataatggcacaatgcaaataatatgttacatcaaggctattttggacatttt |
204 |
Q |
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|||| ||||||| |||||||||||||| ||||||||| | |||||||||| |||| |
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| T |
5788344 |
aaaaaaatggcataatgcaaataatatattacatcaaagttattttggacttttt |
5788398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 41002489 - 41002538
Alignment:
| Q |
155 |
aatggcacaatgcaaataatatgttacatcaaggctattttggacatttt |
204 |
Q |
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| T |
41002489 |
aatggcataatgcaaataatatattccatcaaggttattttggacttttt |
41002538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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