View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6409_high_28 (Length: 241)

Name: NF6409_high_28
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6409_high_28
NF6409_high_28
[»] chr1 (4 HSPs)
chr1 (23-233)||(32592312-32592522)
chr1 (44-233)||(31527430-31527619)
chr1 (62-235)||(51824851-51825024)
chr1 (23-233)||(37030802-37031012)
[»] chr3 (5 HSPs)
chr3 (23-233)||(49188291-49188501)
chr3 (23-233)||(49192027-49192237)
chr3 (23-233)||(49208304-49208514)
chr3 (19-200)||(49203129-49203310)
chr3 (26-233)||(49213147-49213354)
[»] chr8 (1 HSPs)
chr8 (23-233)||(26756670-26756880)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 23 - 233
Target Start/End: Complemental strand, 32592522 - 32592312
Alignment:
Q  23 gctttcttcttcgccaactcagaattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactcttaatccctccttgt 122  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32592522 gctttcttcttcgccaactcagaattagactcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactctaaatccctccttgt 32592423  T
Q  123 cactctctccagccctctgcatagcaataattttcgtctccgcgtcaatttttgctgcattctgcagtgtttgtccttccctatattttgagccaacttc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32592422 cactctctccagccctctgcatagcaataattttcgtctccgcgttaatttttgctgcattctgcagtgtttgtccttccctagattttgagccaacttc 32592323  T
Q  223 acctttcatct 233  Q
    |||||||||||    
T  32592322 acctttcatct 32592312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 44 - 233
Target Start/End: Original strand, 31527430 - 31527619
Alignment:
Q  44 gaattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactcttaatccctccttgtcactctctccagccctctgca 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31527430 gaattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactctaaatccctccttgtcactctctccagccctctgca 31527529  T
Q  144 tagcaataattttcgtctccgcgtcaatttttgctgcattctgcagtgtttgtccttccctatattttgagccaacttcacctttcatct 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31527530 tagcaataattttcgtctccgcgtcaatttttgctgcattctgcagtgtttgtccttccctagattttgagccaacttcacctttcatct 31527619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 62 - 235
Target Start/End: Original strand, 51824851 - 51825024
Alignment:
Q  62 tcagcctctctttgattctcaaaaaccttcacttcagtcctaactcttaatccctccttgtcactctctccagccctctgcatagcaataattttcgtct 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||| ||||||||    
T  51824851 tcagcctctctttgattctcaaaaaccttcacttcagtcctaactctaaatccctccttgttactctctccagccctctgcatcgcaataactttcgtct 51824950  T
Q  162 ccgcgtcaatttttgctgcattctgcagtgtttgtccttccctatattttgagccaacttcacctttcatctca 235  Q
    | |||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||    
T  51824951 ctgcgtcaatttttgctgcattctgcagtgtttgtccttccctagatttcgaaccaacttcacctttcatctca 51825024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 23 - 233
Target Start/End: Original strand, 37030802 - 37031012
Alignment:
Q  23 gctttcttcttcgccaactcagaattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactcttaatccctccttgt 122  Q
    ||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||| ||| | | ||||||||| |    
T  37030802 gctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaactttcacttcagtcctcactttaattccctccttct 37030901  T
Q  123 cactctctccagccctctgcatagcaataattttcgtctccgcgtcaatttttgctgcattctgcagtgtttgtccttccctatattttgagccaacttc 222  Q
    ||| ||||||||| |||||||| |||||||  |||||||| || |||||||| |||||||||||||| ||||||||||||||  ||||||| |||| |||    
T  37030902 caccctctccagctctctgcattgcaataaccttcgtctctgcatcaattttcgctgcattctgcagcgtttgtccttccctcaattttgaaccaatttc 37031001  T
Q  223 acctttcatct 233  Q
    |||||||||||    
T  37031002 acctttcatct 37031012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 23 - 233
Target Start/End: Original strand, 49188291 - 49188501
Alignment:
Q  23 gctttcttcttcgccaactcagaattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactcttaatccctccttgt 122  Q
    ||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||| | | ||||||||| |    
T  49188291 gctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctcactttaattccctccttct 49188390  T
Q  123 cactctctccagccctctgcatagcaataattttcgtctccgcgtcaatttttgctgcattctgcagtgtttgtccttccctatattttgagccaacttc 222  Q
    ||| ||||||||| |||||||| |||||||  |||||||| || ||||||||||||||||||||||| ||||||||||||||  ||||||| |||| |||    
T  49188391 caccctctccagctctctgcatcgcaataaccttcgtctctgcatcaatttttgctgcattctgcagcgtttgtccttccctcaattttgaaccaatttc 49188490  T
Q  223 acctttcatct 233  Q
    |||||||||||    
T  49188491 acctttcatct 49188501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 23 - 233
Target Start/End: Original strand, 49192027 - 49192237
Alignment:
Q  23 gctttcttcttcgccaactcagaattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactcttaatccctccttgt 122  Q
    ||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| | | |||||||||||    
T  49192027 gctttcttcttagccaattcagaattagcctcagccacttcagcttctctctgattctcaaaaaccttcacttcagtcctcactttaattccctccttgt 49192126  T
Q  123 cactctctccagccctctgcatagcaataattttcgtctccgcgtcaatttttgctgcattctgcagtgtttgtccttccctatattttgagccaacttc 222  Q
    | | |||||||||||||||||| |||||||| || ||||| || ||||||||||||||||| || |||||||||||||||||  |||| || ||||  ||    
T  49192127 cgccctctccagccctctgcatcgcaataatctttgtctctgcatcaatttttgctgcattttgtagtgtttgtccttccctcaatttcgaaccaatctc 49192226  T
Q  223 acctttcatct 233  Q
    |||||||||||    
T  49192227 acctttcatct 49192237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 23 - 233
Target Start/End: Original strand, 49208304 - 49208514
Alignment:
Q  23 gctttcttcttcgccaactcagaattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactcttaatccctccttgt 122  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| | | |||||  || |    
T  49208304 gctttcttcttagccaactcggaattagcctcagccacttcagcctctctttgattctcaaaaactttcacttcagtcctcactttaattccctgtttct 49208403  T
Q  123 cactctctccagccctctgcatagcaataattttcgtctccgcgtcaatttttgctgcattctgcagtgtttgtccttccctatattttgagccaacttc 222  Q
    |||  ||||||||||||||||| |||||||  |||||||| || |||||||| ||||| ||||| |  ||||||||||||||  ||||||| |||| |||    
T  49208404 caccttctccagccctctgcatcgcaataaccttcgtctctgcatcaattttcgctgcgttctggatcgtttgtccttccctcaattttgaaccaatttc 49208503  T
Q  223 acctttcatct 233  Q
    |||||||||||    
T  49208504 acctttcatct 49208514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 49203129 - 49203310
Alignment:
Q  19 agctgctttcttcttcgccaactcagaattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactcttaatccctcc 118  Q
    |||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| | | |||||||    
T  49203129 agctgccttcttcttagccaactcagaattagcctcagccacctcagcctctctctgattctcaaaaaccttcacttcagtcctcactttaattccctcc 49203228  T
Q  119 ttgtcactctctccagccctctgcatagcaataattttcgtctccgcgtcaatttttgctgcattctgcagtgtttgtcctt 200  Q
    ||||||| || ||| | ||||||||  ||||||| ||| ||||| || ||||| || |||||||||||||| |||| |||||    
T  49203229 ttgtcaccctatccggtcctctgcagtgcaataacttttgtctctgcatcaatcttcgctgcattctgcagcgtttttcctt 49203310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 26 - 233
Target Start/End: Original strand, 49213147 - 49213354
Alignment:
Q  26 ttcttcttcgccaactcagaattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactcttaatccctccttgtcac 125  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| || ||| | | ||||| ||| ||||    
T  49213147 ttctttttggccaactccgaattagcctcagccacttcagcctctctctgattctcaaatactttcacttcagttctcactttaattccctgcttctcac 49213246  T
Q  126 tctctccagccctctgcatagcaataattttcgtctccgcgtcaatttttgctgcattctgcagtgtttgtccttccctatattttgagccaacttcacc 225  Q
    | ||||| ||||| ||||| || ||||  |||||||| || ||||||||||||||||||||||| ||||||||| ||||  |||| || |||| ||||||    
T  49213247 tttctcctgccctttgcatcgctataaccttcgtctctgcatcaatttttgctgcattctgcagcgtttgtcctaccctcaatttcgaaccaatttcacc 49213346  T
Q  226 tttcatct 233  Q
    ||||||||    
T  49213347 tttcatct 49213354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 23 - 233
Target Start/End: Original strand, 26756670 - 26756880
Alignment:
Q  23 gctttcttcttcgccaactcagaattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactcttaatccctccttgt 122  Q
    ||||||||||| | |||||| ||||||||||| ||||| ||||||||||| | ||||||||||||||||||||||||||||||| | | | | ||||| |    
T  26756670 gctttcttcttagtcaactcggaattagcctcggccacctcagcctctctcttattctcaaaaaccttcacttcagtcctaactttaatttcttccttct 26756769  T
Q  123 cactctctccagccctctgcatagcaataattttcgtctccgcgtcaatttttgctgcattctgcagtgtttgtccttccctatattttgagccaacttc 222  Q
    ||  |||||||||||||||| | ||||| | ||||||||| || |||||||| |||||||||||||| |||||||||| |||  |||| || ||||||||    
T  26756770 cagcctctccagccctctgcgtcgcaatgactttcgtctctgcatcaattttcgctgcattctgcagcgtttgtcctttcctcgatttcgatccaacttc 26756869  T
Q  223 acctttcatct 233  Q
    |||||||||||    
T  26756870 acctttcatct 26756880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University