View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6409_high_31 (Length: 240)

Name: NF6409_high_31
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6409_high_31
NF6409_high_31
[»] chr1 (2 HSPs)
chr1 (39-240)||(3429478-3429672)
chr1 (48-240)||(3425999-3426193)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 39 - 240
Target Start/End: Complemental strand, 3429672 - 3429478
Alignment:
Q  39 ataagttaataatcttcctctgcatggatgttggccattataaatacctacatccccatgtcttctttcaaagctcacatccttcaccctctttcctttc 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||| |||||||||||||||||||    
T  3429672 ataagttaataatcttcctctgcatggatgttggccattataaatacctacatccccatgtctt-------agctcacatacttcaccctctttcctttc 3429580  T
Q  139 ccttctactacacctaaatcttcctcttcctaacaaaatagtttcttttttctttctaaaacaaattgtacaaaaacaaagaagacaaaatgaggactat 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3429579 ccttctactacacctaaatcttcctcttcctaacaaaatagtttcttttttctttctaaaacaaattgtacaaaaacaaagaagacaaaatgaggactat 3429480  T

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Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 240
Target Start/End: Complemental strand, 3426193 - 3425999
Alignment:
Q  48 taatcttcctctgcatggatgttggccattataaatacctacatccccatgtcttctttca-aagctcacatccttcaccctctttcctttcccttctac 146  Q
    |||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||  ||||| ||| ||||||||||||||||||||||||||||    
T  3426193 taatcttcttcttcatggatgttggccattataaatacctacctccccatgtcttctttcccaagcttacacccttcaccctctttcctttcccttctac 3426094  T
Q  147 tacacctaaatcttcctcttcctaacaaaatagtttcttttttctttctaaaacaaattgtacaaaaac----aaagaagacaaaatgaggactatac 240  Q
    |||||||||||||  ||||||||||| |||| ||   ||||| ||| ||||||  ||| ||||||||||    ||||||||||||||||||| |||||    
T  3426093 tacacctaaatctctctcttcctaactaaatcgt---tttttccttcctaaaatcaatagtacaaaaacaaagaaagaagacaaaatgaggagtatac 3425999  T

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