View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6409_high_4 (Length: 601)
Name: NF6409_high_4
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6409_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 19 - 591
Target Start/End: Complemental strand, 48287355 - 48286792
Alignment:
| Q |
19 |
tttttatgttttgtttctacttgaaagtttacacattgaaatgggaccacccaatcaagattgaatagttcaaatcttaaaatagnnnnnnnnnnnnngt |
118 |
Q |
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| T |
48287355 |
tttttatgttttgtttctacttgaaagtttacacattgaaatgggaccacccaatcaagattgaatagttcaaatcttaaaatagttttttattttt-gt |
48287257 |
T |
|
| Q |
119 |
ttgatattaacattttaaggttgaaatttggatagtctgatcttgcagattgtcaccttttgaaaaatagtttaataaaagttttactgcattttcattg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||| |
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| T |
48287256 |
ttgatattaacattttaaggttgaaatttggatagtctgatcttgcagattgtcaccttttgaaaaatggtttgataaaagttttaccgcattttcattg |
48287157 |
T |
|
| Q |
219 |
gagaacatgacacaactaacaagtctttccctaaacaaaaccaataaaatttgaagatgaaatgctaattaaacaaatggaataacatgaatgaagatta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48287156 |
gagaacatgacacaactaacaagtctttccctaaacaaaaccaataaaatttgaagatgaaatgctaa----acaaatggaataacatgaatgaagatta |
48287061 |
T |
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| Q |
319 |
ttattaactaaaaaagtgatcgatgaagagggtcatcatataacatagatagaatagttatggcgttaccatgcattaccatttgaatacagtgaaggaa |
418 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48287060 |
ttattaactaaacaagtgat----gaagagggtcatcatataacatagatagaatagttatggcgttaccatgcattaccatttgaatacagtgaaggaa |
48286965 |
T |
|
| Q |
419 |
caaggaggcatgtcaccattttgaatctgtctcaaagtaacatcaccacaaacaacagtaacaccaaccatcatggatttccaaccttgaaccctaacac |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48286964 |
caaggaggcatgtcaccattttgaatctgtctcaaagtaacatcaccacaaacaacagtaacaccaatcatcatggatttccaaccttgaaccctaacac |
48286865 |
T |
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| Q |
519 |
tcgttcttgttttcacctcaacactaggcaccaaagctttactactaaaagcacttttcaacttcctcctttg |
591 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48286864 |
tcgttcttgttttcacctcaacactaggcaccaaagctttactactaaaagcacttttcaacttcctcctttg |
48286792 |
T |
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