View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6409_high_43 (Length: 203)
Name: NF6409_high_43
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6409_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 37091177 - 37091347
Alignment:
| Q |
15 |
cataggtgttttgtagtgtgtggattccttccacttcaactagtttcatcttatgaccttgaattctgaaattgatggaagttgtgagtccaacatttga |
114 |
Q |
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| T |
37091177 |
cataagtgttttgtagtgtgtggattccttccacttcaactagtttcatcttatgaccttgaattctgaaattgatggaagttgtgagtccaacatttga |
37091276 |
T |
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| Q |
115 |
tatccggaatctgtatgtattgcctgccaaataagcaagaaaactgtaattactattgttgagtatgactc |
185 |
Q |
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| T |
37091277 |
tatccggaatctgtatgtattgcctgccaaataagcaagaaaactgtaattactattgttgagtatgactc |
37091347 |
T |
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Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 17347266 - 17347140
Alignment:
| Q |
15 |
cataggtgttttgtagtgtgtggattccttccacttcaactagtttcatcttatgaccttgaattctgaaattgatggaagttgtgagtccaacatttga |
114 |
Q |
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| T |
17347266 |
cataagtgttttgcagagtgtgacttccttccacctcaacaagctttatcttatgcccttggattctgaaattgattgatgtggtaatccccacatttga |
17347167 |
T |
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| Q |
115 |
tatccggaatctgtatgtattgcctgc |
141 |
Q |
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| T |
17347166 |
tatccggaatctgtaagtcttgcctgc |
17347140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 17136574 - 17136660
Alignment:
| Q |
39 |
ttccttccacttcaactagtttcatcttatgaccttgaattctgaaattgatggaagttgtgagtccaacatttgatatccggaatc |
125 |
Q |
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| T |
17136574 |
ttccttccacctcaacaagcttcatcttatgcccttggattctgaaattgatggatgtggtaatccccacatttgatatccggaatc |
17136660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 55295970 - 55295900
Alignment:
| Q |
71 |
ccttgaattctgaaattgatggaagttgtgagtccaacatttgatatccggaatctgtatgtattgcctgc |
141 |
Q |
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| T |
55295970 |
ccttggattctgaagttgatggatgttgcgagcccaacatttgatattctgaatctatatgtcttacctgc |
55295900 |
T |
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