View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6409_high_7 (Length: 506)

Name: NF6409_high_7
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6409_high_7
NF6409_high_7
[»] scaffold0536 (5 HSPs)
scaffold0536 (238-487)||(6497-6746)
scaffold0536 (9-191)||(6268-6450)
scaffold0536 (273-464)||(10514-10705)
scaffold0536 (14-191)||(10257-10432)
scaffold0536 (65-147)||(1278-1360)
[»] chr4 (10 HSPs)
chr4 (238-463)||(48912331-48912556)
chr4 (238-478)||(48958097-48958337)
chr4 (238-478)||(48965282-48965519)
chr4 (28-191)||(48912121-48912284)
chr4 (238-455)||(48961267-48961486)
chr4 (30-191)||(48958384-48958545)
chr4 (9-191)||(48965566-48965748)
chr4 (350-464)||(48974085-48974199)
chr4 (379-422)||(48951252-48951295)
chr4 (154-188)||(48974349-48974383)
[»] chr6 (4 HSPs)
chr6 (272-455)||(12590192-12590375)
chr6 (28-191)||(12589945-12590108)
chr6 (28-191)||(12483240-12483403)
chr6 (277-443)||(12483492-12483658)
[»] chr8 (1 HSPs)
chr8 (238-485)||(12641467-12641714)
[»] chr2 (5 HSPs)
chr2 (238-458)||(13448336-13448553)
chr2 (238-440)||(13440191-13440390)
chr2 (33-191)||(13448600-13448758)
chr2 (238-473)||(13454792-13455024)
chr2 (32-108)||(13455154-13455230)
[»] chr7 (2 HSPs)
chr7 (78-190)||(3417356-3417468)
chr7 (238-478)||(3417516-3417753)
[»] chr5 (3 HSPs)
chr5 (280-417)||(12540699-12540836)
chr5 (78-191)||(28385571-28385684)
chr5 (242-327)||(28385438-28385520)


Alignment Details
Target: scaffold0536 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 238 - 487
Target Start/End: Original strand, 6497 - 6746
Alignment:
Q  238 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6497 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctc 6596  T
Q  338 tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6597 tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcatggagaacaatttta 6696  T
Q  438 caatgaaaagttgataacacaggtgcgacgaattggggtggtggtggggg 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6697 caatgaaaagttgataacacaggtgcgacgaattggggtggtggtggggg 6746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 6268 - 6450
Alignment:
Q  9 agcacagaggggacaacaaagtgttgtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagc 108  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6268 agcacagaggggacaacaaagtgttgtgagtgtgcatgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagc 6367  T
Q  109 ttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6368 ttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 6450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 273 - 464
Target Start/End: Original strand, 10514 - 10705
Alignment:
Q  273 aaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctgtgggtgcgtttatgacgcattgtgggtggaattcc 372  Q
    ||||||||||||||||||||||| ||||||||| || || ||||||||| | |||||||  | |||||||||||||||||| ||||||||||||||||||    
T  10514 aaagaagaagggtttgattattaagggttgggcccctcaggttatgattctaagccacactgttgtgggtgcgtttatgacacattgtgggtggaattcc 10613  T
Q  373 actgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaattttacaatgaaaagttgataacacaggtgcg 464  Q
    || || ||||| ||||||||||||||||| ||||||||||||||  |||| |||||||||||||||||||| ||||||||||| || |||||    
T  10614 accgtggaggcggttagtgcaggggttccaatgatcacgtggccaatgcatggagaacaattttacaatgagaagttgataacgcaagtgcg 10705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 10257 - 10432
Alignment:
Q  14 agaggggacaacaaagtgttgtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatg 113  Q
    |||| ||| |||| ||||||||||||||||| |||||||||||||||||  ||| ||||| |||||  |||||||||||||| |||||||||||| ||||    
T  10257 agagaggagaacagagtgttgtgagtgtgcatgagtgtctgagttggcttaacttgaagcgagata--tcagtgttgtacatttgctttggaagcctatg 10354  T
Q  114 ccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 191  Q
       |||  | |||||||||||||| |||||||| ||  || |||||||||||||| || ||||  |||| ||||||||    
T  10355 ttatttttcagataaacaactttatgagattgcgtgcagggtagaagcatcgggttacgaatttgtatgagttgttcc 10432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 1278 - 1360
Alignment:
Q  65 actcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaactttacgagattgca 147  Q
    |||| |||| ||||||||||||  | |||||||||||||||| ||| |||  |||||| ||||||||| | || |||||||||    
T  1278 actcaaagcgagataactcagtactctacatatgctttggaaccttttgctatttccctgataaacaattgtatgagattgca 1360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 154; Significance: 2e-81; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 238 - 463
Target Start/End: Original strand, 48912331 - 48912556
Alignment:
Q  238 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg 337  Q
    |||||||||||||| || |||||||||| ||||||||||||||||| | ||||||||| ||||||||||||||| ||||||||| ||||||||| ||| |    
T  48912331 tggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggttatgattctgagccacacagccg 48912430  T
Q  338 tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta 437  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| |||||||| |||||    
T  48912431 tgggtgcatttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacagtttta 48912530  T
Q  438 caatgaaaagttgataacacaggtgc 463  Q
    |||||| |||||||||||||||||||    
T  48912531 caatgagaagttgataacacaggtgc 48912556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 238 - 478
Target Start/End: Complemental strand, 48958337 - 48958097
Alignment:
Q  238 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg 337  Q
    |||||||| || ||||||||||||||||| || ||||||||||| |||||||| |||||||| ||||| ||||||||| ||||| |||||||||  || |    
T  48958337 tggttgccgaaaggattcgaagagagaaacattggaaagaagaaaggtttgatcattagggggtgggccccacaagttttgattctgagccacattgccg 48958238  T
Q  338 tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta 437  Q
    ||||||| |||||||| ||||| |||||||| |||||||| ||||||||||| || |||||||| |||||||||||||||||||| ||||||||||| ||    
T  48958237 tgggtgcatttatgacacattgcgggtggaactccactgtggaggctgttagcgcgggggttccaatgatcacgtggccggtgcatggagaacaattcta 48958138  T
Q  438 caatgaaaagttgataacacaggtgcgacgaattggggtgg 478  Q
    |||||| |||||||||||  | |||||| ||||||||||||    
T  48958137 caatgagaagttgataactaatgtgcgaggaattggggtgg 48958097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 238 - 478
Target Start/End: Complemental strand, 48965519 - 48965282
Alignment:
Q  238 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg 337  Q
    ||||| ||||||||||||||||||||||| || |||||||||   |||||||||||||||||||||||||| || ||| ||||| ||||||||   ||||    
T  48965519 tggttaccaaagggattcgaagagagaaacattggaaagaag---ggtttgattattaggggttgggctccgcaggttctgattctgagccaccccgctg 48965423  T
Q  338 tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta 437  Q
    ||||||| |||||||| |||||||| ||||| ||||| || ||||||||| |||| |||||||||||||| || |||||    || ||||||||||| ||    
T  48965422 tgggtgcctttatgactcattgtggttggaactccacagtggaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattcta 48965323  T
Q  438 caatgaaaagttgataacacaggtgcgacgaattggggtgg 478  Q
    ||| |||||  |||||||| | |||||| | ||||| ||||    
T  48965322 caacgaaaaactgataacagaagtgcgagggattggagtgg 48965282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 28 - 191
Target Start/End: Original strand, 48912121 - 48912284
Alignment:
Q  28 agtgttgtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggata 127  Q
    |||||||||||||||||||||||| ||||||||||  ||||||| | ||||||||| ||| ||||||||||||||||||||  ||| | |||  ||||||    
T  48912121 agtgttgtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccaatgtcatttttcggata 48912220  T
Q  128 aacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 191  Q
    |||||||||| |||||||| || ||||| ||||||||| ||||| |||||||||||||||||||    
T  48912221 aacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcc 48912284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 238 - 455
Target Start/End: Complemental strand, 48961486 - 48961267
Alignment:
Q  238 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg 337  Q
    |||||||| || ||||| ||||||||||| || | |||||||||||||||||| |||| ||| ||||| ||||||||||||||  || |||||| ||| |    
T  48961486 tggttgccgaaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcgg 48961387  T
Q  338 tgggtgcgtttatgacgcattgtgggtggaa--ttccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaattt 435  Q
    |||||| ||||||||||||||| ||||||||   |||||  ||||||||| |||||||||| | || ||||| || ||||| || || |||||||||||     
T  48961386 tgggtgtgtttatgacgcattgcgggtggaactctccaccattgaggctggtagtgcagggatcccaatgataacatggcccgtacatggagaacaattc 48961287  T
Q  436 tacaatgaaaagttgataac 455  Q
    ||||| || |||||||||||    
T  48961286 tacaacgagaagttgataac 48961267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 30 - 191
Target Start/End: Complemental strand, 48958545 - 48958384
Alignment:
Q  30 tgttgtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggataaa 129  Q
    |||||| |||||||| |  ||||||||||||||  ||| ||||  | |||||||||||||||||||||||||||||||| ||||   |||  | ||||||    
T  48958545 tgttgttagtgtgcatggttgtctgagttggctcaacttgaagagacataactcagtgttgtacatatgctttggaagcatatgttatttatctgataaa 48958446  T
Q  130 caactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 191  Q
    |||||||| |||||||| ||||||||||||||||| |||||| ||||  |||||||||||||    
T  48958445 caactttatgagattgcgtgtgggatagaagcatcaggtcacgaatttgtatgggttgttcc 48958384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 191
Target Start/End: Complemental strand, 48965748 - 48965566
Alignment:
Q  9 agcacagaggggacaacaaagtgttgtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagc 108  Q
    |||| ||||||||||| | ||||  ||||| ||||| |||||| ||||||||||  | || |||| | |||||||||||||||||||| |||||||||||    
T  48965748 agcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaattccaagcgacataactcagtgttgtacataagctttggaagc 48965649  T
Q  109 ttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 191  Q
     | || | ||  | ||||||||| ||||| |||||||| ||||  |||||||||||||||||  | || ||||||||| ||||    
T  48965648 ctctgtcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattcc 48965566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 350 - 464
Target Start/End: Complemental strand, 48974199 - 48974085
Alignment:
Q  350 tgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaattttacaatgaaaagtt 449  Q
    |||| ||||| |||||||| ||||| || || || ||||||||||||||||| |||||||||||||| ||||| |  |||||||| ||||| || |||||    
T  48974199 tgacacattgcgggtggaactccaccgtggaagccgttagtgcaggggttccaatgatcacgtggccagtgcatgacgaacaattctacaacgagaagtt 48974100  T
Q  450 gataacacaggtgcg 464  Q
    |||||| ||||||||    
T  48974099 gataactcaggtgcg 48974085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 379 - 422
Target Start/End: Complemental strand, 48951295 - 48951252
Alignment:
Q  379 gaggctgttagtgcaggggttccgatgatcacgtggccggtgca 422  Q
    |||||| |||||| ||||||||||||||||||||||||||||||    
T  48951295 gaggctattagtgtaggggttccgatgatcacgtggccggtgca 48951252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 154 - 188
Target Start/End: Complemental strand, 48974383 - 48974349
Alignment:
Q  154 atagaagcatcgggtcacaaattcatatgggttgt 188  Q
    |||||||||||||||||| ||||||||||||||||    
T  48974383 atagaagcatcgggtcaccaattcatatgggttgt 48974349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 272 - 455
Target Start/End: Original strand, 12590192 - 12590375
Alignment:
Q  272 gaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctgtgggtgcgtttatgacgcattgtgggtggaattc 371  Q
    ||||||||||||||||||| |||||||||||||| |||||||| |||||| |||||||||| || ||||| ||||||||||| |||||||| ||||||||    
T  12590192 gaaagaagaagggtttgatcattaggggttgggccccacaagtaatgattatgagccacaatgcagtgggcgcgtttatgacacattgtggatggaattc 12590291  T
Q  372 cactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaattttacaatgaaaagttgataac 455  Q
    |   || ||||| |||||||| ||  ||||||||||||| |||||  || | || ||||| ||||||||||| |||||||||||    
T  12590292 cgtcgtggaggcggttagtgctggaattccgatgatcacatggccattgaatggtgaacatttttacaatgagaagttgataac 12590375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 28 - 191
Target Start/End: Original strand, 12589945 - 12590108
Alignment:
Q  28 agtgttgtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggata 127  Q
    ||||||||||  ||||| |||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||| ||| |||||  |||| | ||||    
T  12589945 agtgttgtgaacgtgcaagagtgtctgagttggctaaactcgaagcgagataactctgtgttgtacatatgctttgggagcatatgctatttctcagata 12590044  T
Q  128 aacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 191  Q
    |||||||||| |||||| | ||||| ||||||||||| || ||| ||||| |||||||| ||||    
T  12590045 aacaactttatgagatttcgtgtggcatagaagcatcaggccacgaattcgtatgggttattcc 12590108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 28 - 191
Target Start/End: Original strand, 12483240 - 12483403
Alignment:
Q  28 agtgttgtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggata 127  Q
    ||||||||||| ||||| |||||||  ||||||||| |||| |||| ||| || ||||||||||||||||||||||| ||| |||||  |||| | ||||    
T  12483240 agtgttgtgagcgtgcatgagtgtcaaagttggctaaactcaaagcaagaaaattcagtgttgtacatatgctttgggagcctatgcaatttctctgata 12483339  T
Q  128 aacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 191  Q
    |||| |||||||| ||| |||| || ||||||||||||||| | ||||||||||||||||||||    
T  12483340 aacagctttacgaaatttcatgcggaatagaagcatcgggtaaaaaattcatatgggttgttcc 12483403  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 277 - 443
Target Start/End: Original strand, 12483492 - 12483658
Alignment:
Q  277 aagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctgtgggtgcgtttatgacgcattgtgggtggaattccactg 376  Q
    |||| |||||| || || ||||| ||||| ||||| ||  ||||||||||||||   || |||||||| |||||||| || ||||| ||||||||   ||    
T  12483492 aagatgggtttaatcatcagggggtgggcaccacaggtactgattttgagccaccctgcagtgggtgcatttatgactcactgtggatggaattctgttg 12483591  T
Q  377 ttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaattttacaatga 443  Q
    | || || |||||||||||| |||| ||||||||||||||||| ||||| ||||| |||||||||||    
T  12483592 tggaagcggttagtgcagggattccaatgatcacgtggccggttcacggtgaacatttttacaatga 12483658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 238 - 485
Target Start/End: Original strand, 12641467 - 12641714
Alignment:
Q  238 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg 337  Q
    |||||||| || |||||||||||||||||| | | ||| ||||| ||||| || |||||||  ||||| |||||||| |||||||| ||||||   ||||    
T  12641467 tggttgcctaaaggattcgaagagagaaatgttgaaaataagaaaggttttatcattagggagtgggccccacaagtaatgattttaagccacgctgctg 12641566  T
Q  338 tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta 437  Q
    ||||||| || ||||||||||| |||| ||| |||   || |||||||||||||||||| |||| |||||||||||||| ||||| |||||||| || ||    
T  12641567 tgggtgcattcatgacgcattgcgggtcgaactccttggtagaggctgttagtgcagggattccaatgatcacgtggccagtgcaaggagaacagttcta 12641666  T
Q  438 caatgaaaagttgataacacaggtgcgacgaattggggtggtggtggg 485  Q
     ||||| ||| |||||||    |||||| | |||||||||| ||||||    
T  12641667 taatgagaagctgataactgttgtgcgaaggattggggtggaggtggg 12641714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 238 - 458
Target Start/End: Complemental strand, 13448553 - 13448336
Alignment:
Q  238 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg 337  Q
    ||||| || |||||||| |||||||||||||||||   ||||||||||||||| |||||||||||||| ||||| |||| ||| |||||||||   || |    
T  13448553 tggttaccgaagggatttgaagagagaaatatcgg---gaagaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcag 13448457  T
Q  338 tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta 437  Q
    |||| |  |||||||||||||| ||| |||| || || || |||||||||||||| || ||||| ||||| ||||||||||| || ||||| ||||| ||    
T  13448456 tggggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattcta 13448357  T
Q  438 caatgaaaagttgataacaca 458  Q
    |||||| ||  ||||||||||    
T  13448356 caatgagaaactgataacaca 13448336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 238 - 440
Target Start/End: Complemental strand, 13440390 - 13440191
Alignment:
Q  238 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg 337  Q
    ||||||||||||||||||||||||||||| ||  |   || || ||||||||| |||| ||||||||| |||||||||| ||| |||||||||   || |    
T  13440390 tggttgccaaagggattcgaagagagaaacattag---gaggatgggtttgatcattaagggttgggccccacaagttaagatattgagccaccctgcgg 13440294  T
Q  338 tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta 437  Q
    |||| |  |||||||||||||| ||| |||| || | ||| ||| |||||||||| || ||||| ||||| ||||||||||| || ||||| ||||| ||    
T  13440293 tggggggatttatgacgcattgcggggggaactcaattgtagagtctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattcta 13440194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 33 - 191
Target Start/End: Complemental strand, 13448758 - 13448600
Alignment:
Q  33 tgtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaa 132  Q
    ||||| |||||||||| | ||||||||||| || ||  ||  || ||||||||||||||||||||| ||||||||| |   |  |||  | |||||||||    
T  13448758 tgtgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagcatcaactatttttctgataaacaa 13448659  T
Q  133 ctttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 191  Q
    || |||||||| ||||||| |||||||||||| ||||||  ||||||||||||||||||    
T  13448658 ctatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcc 13448600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 238 - 473
Target Start/End: Complemental strand, 13455024 - 13454792
Alignment:
Q  238 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg 337  Q
    |||||||| |||||||| ||||||| ||| ||||   |||| ||||||||||| |||||||||||||| |||||||||| ||| ||||| |||   || |    
T  13455024 tggttgccgaagggatttgaagagaaaaacatcg---agaaaaagggtttgatcattaggggttgggccccacaagttaagatattgagtcaccctgcag 13454928  T
Q  338 tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta 437  Q
    |||| |  |||||||||||||| ||| |||| || |  || |||||||||||    || ||||| ||||| |||||||| || || ||||| ||||| ||    
T  13454927 tggggggatttatgacgcattgcggggggaactcaatcgtagaggctgttagcatgggagttccaatgataacgtggccagtccatggagatcaattcta 13454828  T
Q  438 caatgaaaagttgataacacaggtgcgacgaattgg 473  Q
    ||| || ||  | |||||||| || ||| |||||||    
T  13454827 caacgagaaactaataacacaagttcgaggaattgg 13454792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 13455230 - 13455154
Alignment:
Q  32 ttgtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagc 108  Q
    |||||| ||| |||||||| ||||| ||||| ||||| |||  || ||||||||| ||||||||||| |||||||||    
T  13455230 ttgtgaatgtacacgagtgcctgagctggcttgactcaaagagagttaactcagtattgtacatatgttttggaagc 13455154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 78 - 190
Target Start/End: Original strand, 3417356 - 3417468
Alignment:
Q  78 taactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattc 177  Q
    ||||||||||||||||||||| ||||||||||||  |  |||| | ||||||||||| || ||||||||||  |  ||||||||||||||||||  ||||    
T  3417356 taactcagtgttgtacatatgttttggaagcttaaactatttctctgataaacaactatatgagattgcatacgcaatagaagcatcgggtcacccattc 3417455  T
Q  178 atatgggttgttc 190  Q
    |||||||||||||    
T  3417456 atatgggttgttc 3417468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 238 - 478
Target Start/End: Original strand, 3417516 - 3417753
Alignment:
Q  238 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg 337  Q
    |||||||| |||||||| || |||||||| || |||||||||   ||||||||  ||||||||||||| ||||| |||  ||| |||||||||   || |    
T  3417516 tggttgccgaagggatttgaggagagaaacattggaaagaag---ggtttgatcgttaggggttgggccccacaggttcagatattgagccaccctgcgg 3417612  T
Q  338 tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta 437  Q
    | || |  |||||||| ||||||||| |||| ||   ||||||||||||| ||||||| ||||| ||||| ||||||||||  || ||||| ||||| |     
T  3417613 tagggggatttatgacacattgtggggggaactcatttgttgaggctgttggtgcaggagttccaatgataacgtggccgggtcatggagatcaattgtt 3417712  T
Q  438 caatgaaaagttgataacacaggtgcgacgaattggggtgg 478  Q
    |||||| ||  | |||||||| || ||| ||||||| ||||    
T  3417713 caatgagaaactaataacacaagtccgaggaattggagtgg 3417753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 417
Target Start/End: Complemental strand, 12540836 - 12540699
Alignment:
Q  280 aagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctgtgggtgcgtttatgacgcattgtgggtggaattccactgttg 379  Q
    ||||||||||| |||||||||||||| ||||| |||| ||| |||||||||   || ||||| |  |||||||| ||||||||| | || || | ||| |    
T  12540836 aagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggatttatgacacattgtgggggaaactcaattgtag 12540737  T
Q  380 aggctgttagtgcaggggttccgatgatcacgtggccg 417  Q
    |||||||| |||| || ||||| ||||| |||||||||    
T  12540736 aggctgttggtgcgggagttccaatgataacgtggccg 12540699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 191
Target Start/End: Complemental strand, 28385684 - 28385571
Alignment:
Q  78 taactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattc 177  Q
    |||||||||  |||||||||| ||||||||| ||  || |||| | ||||||||||| || ||||||||||| |   |||||||||| ||||||  ||||    
T  28385684 taactcagttgtgtacatatgttttggaagcataaaccatttctctgataaacaactatatgagattgcatgcgcagtagaagcatcaggtcacccattc 28385585  T
Q  178 atatgggttgttcc 191  Q
    ||||||||||||||    
T  28385584 atatgggttgttcc 28385571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 327
Target Start/End: Complemental strand, 28385520 - 28385438
Alignment:
Q  242 tgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagc 327  Q
    ||||||||||||| || |||||||| || |||||||||   ||||| || || ||||||||||| ||||||||| |||| ||||||    
T  28385520 tgccaaagggatttgaggagagaaacattggaaagaag---ggtttcataatcaggggttgggccccacaagttctgatattgagc 28385438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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