View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6409_high_8 (Length: 480)

Name: NF6409_high_8
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6409_high_8
NF6409_high_8
[»] chr4 (2 HSPs)
chr4 (280-425)||(14135739-14135885)
chr4 (338-427)||(35781871-35781960)
[»] chr2 (4 HSPs)
chr2 (279-427)||(15262890-15263038)
chr2 (320-428)||(39266094-39266202)
chr2 (338-398)||(33912276-33912336)
chr2 (338-425)||(1344527-1344613)
[»] chr7 (3 HSPs)
chr7 (312-426)||(33819776-33819890)
chr7 (4-49)||(6174499-6174544)
chr7 (313-351)||(44107776-44107814)
[»] chr6 (4 HSPs)
chr6 (278-354)||(17828828-17828904)
chr6 (278-358)||(4044053-4044133)
chr6 (320-424)||(10099094-10099198)
chr6 (313-375)||(12771922-12771984)
[»] chr1 (2 HSPs)
chr1 (279-396)||(12469816-12469938)
chr1 (338-427)||(30951409-30951498)
[»] chr8 (1 HSPs)
chr8 (338-427)||(23585353-23585442)
[»] scaffold0667 (1 HSPs)
scaffold0667 (338-426)||(624-712)
[»] chr3 (1 HSPs)
chr3 (338-423)||(9260727-9260812)
[»] chr5 (2 HSPs)
chr5 (338-396)||(41842453-41842511)
chr5 (313-386)||(34731269-34731342)


Alignment Details
Target: chr4 (Bit Score: 91; Significance: 7e-44; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 280 - 425
Target Start/End: Complemental strand, 14135885 - 14135739
Alignment:
Q  280 tcaggataggaaagatatatcatattttgtcataatcctttgtttgatgcaccaataggatatgataaattattccttttatttatcctatcctatcact 379  Q
    ||||||||||||| ||||||||||| ||||  |||||||||||||||||||||||||  |||||||||||||||||||| | ||||| ||||||||||||    
T  14135885 tcaggataggaaaaatatatcatatcttgttttaatcctttgtttgatgcaccaataaaatatgataaattattcctttaacttatcatatcctatcact 14135786  T
Q  380 cctttgtattttatatcctgag-tttggactgggttaaaattaacct 425  Q
    |||||||||||| ||||||||| ||| | ||||||||||||||||||    
T  14135785 cctttgtattttctatcctgagttttaggctgggttaaaattaacct 14135739  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 427
Target Start/End: Complemental strand, 35781960 - 35781871
Alignment:
Q  338 gatatgataaattattccttttatttatcctatcctatcactcctttgtattttatatcctgagtttggactgggttaaaattaacctat 427  Q
    |||| |||||||||||| ||||| ||||  |||| ||||||||||||||||||| |||||| | ||| |  |||||||||||||||||||    
T  35781960 gataggataaattattcattttacttattttatcttatcactcctttgtattttctatcctaaatttaggttgggttaaaattaacctat 35781871  T

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Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 279 - 427
Target Start/End: Complemental strand, 15263038 - 15262890
Alignment:
Q  279 gtcaggataggaaagatatatcatattttgtcataatcctttgtttgatgcaccaataggatatgataaattattccttttatttatcctatcctatcac 378  Q
    ||||||||| |||| ||||||||||| ||||  ||||| |||||||||||||||||||| ||||||||||||||| ||||||  |||  |||||||||||    
T  15263038 gtcaggataagaaatatatatcatatcttgttttaatcttttgtttgatgcaccaatagaatatgataaattatttcttttacctattatatcctatcac 15262939  T
Q  379 tcctttgtattttatatcctgagtttggactgggttaaaattaacctat 427  Q
    ||||||||||||| ||||||||||||   ||||||||||||||||||||    
T  15262938 tcctttgtattttctatcctgagttttagctgggttaaaattaacctat 15262890  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 320 - 428
Target Start/End: Original strand, 39266094 - 39266202
Alignment:
Q  320 tgtttgatgcaccaataggatatgataaattattccttttatttatcctatcctatcactcctttgtattttatatcctgagtttggactgggttaaaat 419  Q
    |||||| |||| ||||  |||| |||||||||||||||||| ||||| |||| ||||||||||||| ||||| |||||| |||||   ||||||||||||    
T  39266094 tgtttggtgcagcaatgagataagataaattattccttttacttatcttatcttatcactcctttgcattttctatcctaagtttaagctgggttaaaat 39266193  T
Q  420 taacctatt 428  Q
    |||||||||    
T  39266194 taacctatt 39266202  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 338 - 398
Target Start/End: Complemental strand, 33912336 - 33912276
Alignment:
Q  338 gatatgataaattattccttttatttatcctatcctatcactcctttgtattttatatcct 398  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| ||||||    
T  33912336 gatatgataaattattccttttatttatcttatccaatcactcctttctattttctatcct 33912276  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 425
Target Start/End: Original strand, 1344527 - 1344613
Alignment:
Q  338 gatatgataaattattccttttatttatcctatcctatcactcctttgtattttatatcctgagtttggactgggttaaaattaacct 425  Q
    |||| ||||||| ||||||||||  |||||||||||||||| |||||||||||| ||| || ||||| || |||||||||||||||||    
T  1344527 gataggataaatcattccttttacctatcctatcctatcacgcctttgtattttctat-ctaagtttagattgggttaaaattaacct 1344613  T

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Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 312 - 426
Target Start/End: Complemental strand, 33819890 - 33819776
Alignment:
Q  312 taatcctttgtttgatgcaccaataggatatgataaattattccttttatttatcctatcctatcactcctttgtattttatatcctgagtttggactgg 411  Q
    ||||| ||||||| ||| ||||||| ||||||| ||||||||||||| | ||||| |||||||||||||||||||||||  || |||||||||||| |      
T  33819890 taatcttttgtttaatgtaccaataagatatgacaaattattcctttaacttatcatatcctatcactcctttgtatttattaacctgagtttggattaa 33819791  T
Q  412 gttaaaattaaccta 426  Q
    |||||||||||||||    
T  33819790 gttaaaattaaccta 33819776  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 6174499 - 6174544
Alignment:
Q  4 tgagattgataggaagtcactagacctggagaatatgccctcagat 49  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||    
T  6174499 tgagattgataggaaatcactagacctggagaatatgcactcagat 6174544  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 44107776 - 44107814
Alignment:
Q  313 aatcctttgtttgatgcaccaataggatatgataaatta 351  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  44107776 aatcctttgtttggtgcaccaataggaaatgataaatta 44107814  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 278 - 354
Target Start/End: Complemental strand, 17828904 - 17828828
Alignment:
Q  278 agtcaggataggaaagatatatcatattttgtcataatcctttgtttgatgcaccaataggatatgataaattattc 354  Q
    |||||||||| ||||||||||||||||| |||  |||||||| ||||||||||||||||||||||||||||||||||    
T  17828904 agtcaggatatgaaagatatatcatattatgttttaatccttcgtttgatgcaccaataggatatgataaattattc 17828828  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 278 - 358
Target Start/End: Complemental strand, 4044133 - 4044053
Alignment:
Q  278 agtcaggataggaaagatatatcatattttgtcataatcctttgtttgatgcaccaataggatatgataaattattccttt 358  Q
    |||||||||| |||| |||||||||||  |||  ||||| |||||||||||||||||||||||||||||||||||| ||||    
T  4044133 agtcaggataagaaatatatatcatatcctgttttaatcttttgtttgatgcaccaataggatatgataaattatttcttt 4044053  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 320 - 424
Target Start/End: Original strand, 10099094 - 10099198
Alignment:
Q  320 tgtttgatgcaccaataggatatgataaattattccttttatttatcctatcctatcactcctttgtattttatatcctgagtttggactgggttaaaat 419  Q
    |||||| |||| ||||  |||| ||||||||||||| |||| ||||| |||| ||||||||||||||||||| |||||| |||||  ||||| |||||||    
T  10099094 tgtttggtgcaacaatgagataggataaattattccatttacttatcatatcttatcactcctttgtattttctatcctaagtttaaactggattaaaat 10099193  T
Q  420 taacc 424  Q
    |||||    
T  10099194 taacc 10099198  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 375
Target Start/End: Complemental strand, 12771984 - 12771922
Alignment:
Q  313 aatcctttgtttgatgcaccaataggatatgataaattattccttttatttatcctatcctat 375  Q
    ||||||||||||| |||| ||||| ||||||| |||| |  ||||||||||||| ||||||||    
T  12771984 aatcctttgtttggtgcagcaatatgatatgagaaatcaaaccttttatttatcttatcctat 12771922  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 279 - 396
Target Start/End: Original strand, 12469816 - 12469938
Alignment:
Q  279 gtcaggataggaaagatatatcatattttgtcataatcctttgtttgatgcaccaataggatatgataaattattccttttatttatcc-----tatcct 373  Q
    |||||||||| |||||||||||||||  | | ||||||||||||||||| || |||||  ||||||||| |||||||||||||||||||     ||||||    
T  12469816 gtcaggatagaaaagatatatcatatcatattataatcctttgtttgatacatcaataaaatatgataagttattccttttatttatcctattttatcct 12469915  T
Q  374 atcactcctttgtattttatatc 396  Q
    |||||||||||||| ||| ||||    
T  12469916 atcactcctttgtaatttctatc 12469938  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 427
Target Start/End: Original strand, 30951409 - 30951498
Alignment:
Q  338 gatatgataaattattccttttatttatcctatcctatcactcctttgtattttatatcctgagtttggactgggttaaaattaacctat 427  Q
    |||| |||||||||||||||||| ||||| ||| ||||| |||||||||||||| |||||| |||||    | |||||||||||||||||    
T  30951409 gataggataaattattccttttacttatcatatgctatcgctcctttgtattttctatcctaagtttaagttaggttaaaattaacctat 30951498  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 338 - 427
Target Start/End: Original strand, 23585353 - 23585442
Alignment:
Q  338 gatatgataaattattccttttatttatcctatcctatcactcctttgtattttatatcctgagtttggactgggttaaaattaacctat 427  Q
    |||| ||||||||||| |||||| |||||||||||||||||||  ||||||||| |||||| ||||| |  |||||||||||||||||||    
T  23585353 gataggataaattattacttttacttatcctatcctatcactcagttgtattttctatcctaagtttaggttgggttaaaattaacctat 23585442  T

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Target: scaffold0667 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 338 - 426
Target Start/End: Complemental strand, 712 - 624
Alignment:
Q  338 gatatgataaattattccttttatttatcctatcctatcactcctttgtattttatatcctgagtttggactgggttaaaattaaccta 426  Q
    |||| ||||||||| |||||||| |||| ||||| ||||||||||||||||||| ||| || ||||| | |||||||||||||||||||    
T  712 gataagataaattaatccttttacttattctatcatatcactcctttgtattttctattctaagtttaggctgggttaaaattaaccta 624  T

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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 338 - 423
Target Start/End: Complemental strand, 9260812 - 9260727
Alignment:
Q  338 gatatgataaattattccttttatttatcctatcctatcactcctttgtattttatatcctgagtttggactgggttaaaattaac 423  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||  |||||||||| |||||| ||||| | ||| ||||||||||||    
T  9260812 gatatgataaattattcattttacttatcatatcctatcacttttttgtattttctatcctaagtttaggctgtgttaaaattaac 9260727  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 396
Target Start/End: Complemental strand, 41842511 - 41842453
Alignment:
Q  338 gatatgataaattattccttttatttatcctatcctatcactcctttgtattttatatc 396  Q
    ||||| ||||||||||||||||| |||| ||||||||||||||||||||||||| ||||    
T  41842511 gatataataaattattccttttacttatactatcctatcactcctttgtattttctatc 41842453  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 386
Target Start/End: Original strand, 34731269 - 34731342
Alignment:
Q  313 aatcctttgtttgatgcaccaataggatatgataaattattccttttatttatcctatcctatcactcctttgt 386  Q
    ||||| ||||||| ||||||||||||| | |||||| ||  ||| || || |||||||||||||| ||||||||    
T  34731269 aatcccttgtttggtgcaccaataggaaaggataaactaaacctattgttaatcctatcctatcaatcctttgt 34731342  T

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