View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6409_low_12 (Length: 452)
Name: NF6409_low_12
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6409_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 11 - 436
Target Start/End: Complemental strand, 10560597 - 10560172
Alignment:
| Q |
11 |
cagagaacttaggtaacacaggacataatttaaaacaataaactatcatcaaccacaaatacaatgaagtataaaccaaatcataattcaaagctttgac |
110 |
Q |
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| T |
10560597 |
cagagaacttaggtaacacaggacataatttaaaacaataaactatcatcaaccacaaatataatgaagtataaaccaaatcataattcaaagctttgac |
10560498 |
T |
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| Q |
111 |
tgttccacagagtgaaatatggcaattttaataaggtaacaaccaatatgtgtgagccgagaaagtcttaacataattgaaatgaaatcctaacgcctgc |
210 |
Q |
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| T |
10560497 |
tgttccacagagtgaaatatggcaacattaataaggtaacaaccaatatgtgtgagccgagaaagtcttaacataattgaaatgaaatcctaacgcctgc |
10560398 |
T |
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| Q |
211 |
ggttcagacctacagatttataaccctgagctcatacaaaatttcatccatttgaaacactgcaggaagtgtttcaatcagaacagcggcgctatgcttc |
310 |
Q |
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| T |
10560397 |
ggttcagacctacagatttataaccctgagctcatacaaaatttcatccatttgaaacactgcaggaagtgtttcaatcagaacagcggctctatgcttc |
10560298 |
T |
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| Q |
311 |
ctcttttagtgcctgccaacttctctgccttctcaaacactttgttccatatctttaggtccttgtattaaaaattaaaatcatgaaacctataaggtct |
410 |
Q |
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| T |
10560297 |
ctcttttagtgcctgccaacttctctgccttctcaaacactttgttccatatctttaggtccttgtattaaaaattaaaatcatgaaacctataagatct |
10560198 |
T |
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| Q |
411 |
gactggattgacttagttgagcttat |
436 |
Q |
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| T |
10560197 |
gactggattgacttagttgagcttat |
10560172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 236 - 366
Target Start/End: Complemental strand, 10558273 - 10558142
Alignment:
| Q |
236 |
ctgagctcatacaaaatttcatccatttgaaacactgcaggaagtgtttcaatcagaacagcggcgc-tatgcttcctcttttagtgcctgccaacttct |
334 |
Q |
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| T |
10558273 |
ctgagctcatacagaatttcatccatttgaaacactgcaggaagtgtttcaatcaaaactgtggctcttatgcttcctctttcaatgcctgtcatcttct |
10558174 |
T |
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| Q |
335 |
ctgccttctcaaacactttgttccatatcttt |
366 |
Q |
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| T |
10558173 |
ctgccttctcgaatactttgttccatatcttt |
10558142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 10559613 - 10559509
Alignment:
| Q |
16 |
aacttaggtaacacaggacataatttaaaacaataaactatcatcaaccacaaatacaatgaagtataaaccaaatcataattcaaagctttgactgttc |
115 |
Q |
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| T |
10559613 |
aacttaggtaacacaggacataatttagaacaataaactatcatcaacc------acaatgaagtatgaaccaaatcaaaattcaaagctttgacagttc |
10559520 |
T |
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| Q |
116 |
cacagagtgaa |
126 |
Q |
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| T |
10559519 |
cacagggtgaa |
10559509 |
T |
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Back To:
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